|
| Status |
Public on Feb 14, 2004 |
| Title |
ISB Halobacterium ORF microarray |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Halobacterium salinarum NRC-1 |
| |
|
| Description |
Layout of the ISB's spotted-oligonucleotide microarray, for ISB Halobacterium arrays 3883-3910.
Keywords = Halo
Keywords = ISB
Keywords = Institute for Systems Biology
Keywords = Halobacterium
|
| |
|
| Contributor(s) |
Johnson MH, Baliga NS, Marzolf B |
| Submission date |
Feb 11, 2004 |
| Last update date |
May 26, 2005 |
| Contact name |
Michael Hiroshi Johnson |
| E-mail(s) |
[email protected]
|
| Phone |
(206) 732-1319
|
| Fax |
(206) 732-1299
|
| URL |
http://db.systemsbiology.net/users/mjohnson/
|
| Organization name |
Institute for Systems Biology
|
| Department |
Computational Biology
|
| Lab |
Hood Lab
|
| Street address |
1441 North 34th Street
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98103 |
| Country |
USA |
| |
|
| Samples (8)
|
GSM16804, GSM16805, GSM16806, GSM16807, GSM16808, GSM16809
|
| Series (1) |
| GSE1040 |
Halobacterium NRC-1 UV repair |
|
| Data table header descriptions |
| ID |
|
| Number |
Unique feature index |
| zoneRow |
Row of super grid (starting at 1) |
| zoneCol |
Column of super grid (starting at 1) |
| row |
Row within super grid (starting at 1) |
| col |
Column within super grid (starting at 1) |
| ref |
|
| plate_384 |
Index of plate with oligo set |
| row_384 |
Row within 384 well plate |
| col_384 |
Column within 384 well plate |
| gene_name |
Common gene name |
| ORF |
Standardized gene name |
| operon_oligo_ID |
Operon oligo ID # |
| sequence |
Reporter sequence open-reading-frame |
| melting_temperature |
Reporter melting temperature |
| control_type |
Blank, unless feature is a quality control |
| control_qualifier |
Description of quality control |
| date_obtained |
Date ISB received oligo set |
| clone_provider |
Oligo provider (Operon) |
| feature_size |
Size of Feature |
| feature_attachment |
Method by which reporter is attached |
| stranded |
Single vs Double stranded nucleic acid |
| flag |
Quality control flag(s) |
| test_GB_ACC |
failed test GB_ACC |
| CLONE ID |
Operon oligo ID # |
| TAXON |
Taxonomy |
| SPOT_ID |
spot identifier (GEO label for spots missing ORF value) |
Less...
More...