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Platform GPL983 Query DataSets for GPL983
Status Public on Feb 14, 2004
Title ISB Halobacterium ORF microarray 04678-04707
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Halobacterium salinarum NRC-1
 
Description Layout of the ISB's spotted-oligonucleotide microarray, for ISB Halobacterium arrays 04678-04707
Keywords = Halo
Keywords = ISB
Keywords = Institute for Systems Biology
Keywords = Halobacterium
 
Contributor(s) Johnson MH, Baliga NS, Marzolf B
Submission date Feb 11, 2004
Last update date May 26, 2005
Contact name Michael Hiroshi Johnson
E-mail(s) [email protected]
Phone (206) 732-1319
Fax (206) 732-1299
URL http://db.systemsbiology.net/users/mjohnson/
Organization name Institute for Systems Biology
Department Computational Biology
Lab Hood Lab
Street address 1441 North 34th Street
City Seattle
State/province WA
ZIP/Postal code 98103
Country USA
 
Samples (2) GSM16812, GSM16813
Series (1)
GSE1040 Halobacterium NRC-1 UV repair

Data table header descriptions
ID
zoneRow Row of a super grid (starting at 1)
zoneCol Column of a super grid (starting at 1)
row Row within a super grid (starting at 1)
col Column within a super grid (starting at 1)
ref
plate_384 Index of 384 well plate
row_384 Row in 384 well plate
col_384 Column in 384 well plate
gene_name Common gene name
ORF Standardized gene name
operon_oligo_ID Operon oligo ID #
sequence Reporter sequence open-reading-frame
melting_temperature Reporter melting temperature
control_type Blank, unless quality control feature
control_qualifier Description of quality control
date_obtained Date ISB receive oligo set
clone_provider Oligo provider (Operon)
feature_size Feature Size
feature_attachment Method by which reporter is attached
stranded Single vs. Double stranded nucleic acid
flag Quality control flag(s)
CLONE ID Operon Oligo ID #
TAXON Taxonomy
SPOT_ID spot identifier (GEO label for spots missing ORF value)

Data table
ID zoneRow zoneCol row col ref plate_384 row_384 col_384 gene_name ORF operon_oligo_ID sequence melting_temperature control_type control_qualifier date_obtained clone_provider feature_size feature_attachment stranded flag CLONE ID TAXON SPOT_ID
halo_oligo_4678-4707_1 1 1 1 1 HO01H19 1 H 19 VNG0475C VNG0475C 5643 TCGACGGTGACCTCGAAGGTGTCGGCCACGGTCGGCGATGACAGCGTGTAGTATCGCCCCTCCGTTTCGC 84.11 2003-01 Operon 110um covalent ssDNA MARGINAL HO01H19 Halobacterium
halo_oligo_4678-4707_2 1 1 1 2 HO01H19 1 H 19 VNG0475C VNG0475C 5643 TCGACGGTGACCTCGAAGGTGTCGGCCACGGTCGGCGATGACAGCGTGTAGTATCGCCCCTCCGTTTCGC 84.11 2003-01 Operon 110um covalent ssDNA MARGINAL HO01H19 Halobacterium
halo_oligo_4678-4707_3 1 1 1 3 HO01H13 1 H 13 gcd VNG0446G 5619 ACACGAGCGCGGAGTCCGGCCGCCAGTCGAACGCCGACCGCGAAGCGAGCGCGAGTTCGATCGCTTTCTC 85.87 2003-01 Operon 110um covalent ssDNA MARGINAL HO01H13 Halobacterium
halo_oligo_4678-4707_4 1 1 1 4 HO01H13 1 H 13 gcd VNG0446G 5619 ACACGAGCGCGGAGTCCGGCCGCCAGTCGAACGCCGACCGCGAAGCGAGCGCGAGTTCGATCGCTTTCTC 85.87 2003-01 Operon 110um covalent ssDNA MARGINAL HO01H13 Halobacterium
halo_oligo_4678-4707_5 1 1 1 5 HO01H07 1 H 7 purB VNG0415G 5595 GCCACCGACTGGCGGTGCTCGCCGCAAAAGCCTACCGATCCCGCCGACGCACGAGGATGTACATTTCCCG 84.7 2003-01 Operon 110um covalent ssDNA MARGINAL HO01H07 Halobacterium
halo_oligo_4678-4707_6 1 1 1 6 HO01H07 1 H 7 purB VNG0415G 5595 GCCACCGACTGGCGGTGCTCGCCGCAAAAGCCTACCGATCCCGCCGACGCACGAGGATGTACATTTCCCG 84.7 2003-01 Operon 110um covalent ssDNA MARGINAL HO01H07 Halobacterium
halo_oligo_4678-4707_7 1 1 1 7 HO01H01 1 H 1 trpE2 VNG0384G 5571 GACGGTGTCGATGAGCGCCATTGTACGGGGCTTGGGCGCGCCGGTAATAGTTCCGCCGGGAAAGACCGCG 84.7 2003-01 Operon 110um covalent ssDNA MARGINAL HO01H01 Halobacterium
halo_oligo_4678-4707_8 1 1 1 8 HO01H01 1 H 1 trpE2 VNG0384G 5571 GACGGTGTCGATGAGCGCCATTGTACGGGGCTTGGGCGCGCCGGTAATAGTTCCGCCGGGAAAGACCGCG 84.7 2003-01 Operon 110um covalent ssDNA MARGINAL HO01H01 Halobacterium
halo_oligo_4678-4707_9 1 1 1 9 HO01D19 1 D 19 porB VNG0473G 5641 GGAGAACGTGTTGACGAGGCTGAACCCGTCGTGTTCGATGGCCTCCTGGACGATCTCCTGGTGACGCAGC 82.94 2003-01 Operon 110um covalent ssDNA MARGINAL HO01D19 Halobacterium
halo_oligo_4678-4707_10 1 1 1 10 HO01D19 1 D 19 porB VNG0473G 5641 GGAGAACGTGTTGACGAGGCTGAACCCGTCGTGTTCGATGGCCTCCTGGACGATCTCCTGGTGACGCAGC 82.94 2003-01 Operon 110um covalent ssDNA MARGINAL HO01D19 Halobacterium
halo_oligo_4678-4707_11 1 1 1 11 HO01D13 1 D 13 rspA VNG0442G 5617 GCTCGCCATCGTCGCCACCGGCGAGGCGACGTTGTGCATCGCCACCGGAACGTAATACTGGTTCGCCACG 84.7 2003-01 Operon 110um covalent ssDNA MARGINAL HO01D13 Halobacterium
halo_oligo_4678-4707_12 1 1 1 12 HO01D13 1 D 13 rspA VNG0442G 5617 GCTCGCCATCGTCGCCACCGGCGAGGCGACGTTGTGCATCGCCACCGGAACGTAATACTGGTTCGCCACG 84.7 2003-01 Operon 110um covalent ssDNA MARGINAL HO01D13 Halobacterium
halo_oligo_4678-4707_13 1 1 1 13 HO01D07 1 D 7 folP VNG0412G 5593 ACACCGAACACTCCCCGCCGAGGCTCAACAGCTCCTCTTTGAGGTACTGGGCCTGCCGCGTCTGCACCCT 84.11 2003-01 Operon 110um covalent ssDNA MARGINAL HO01D07 Halobacterium
halo_oligo_4678-4707_14 1 1 1 14 HO01D07 1 D 7 folP VNG0412G 5593 ACACCGAACACTCCCCGCCGAGGCTCAACAGCTCCTCTTTGAGGTACTGGGCCTGCCGCGTCTGCACCCT 84.11 2003-01 Operon 110um covalent ssDNA MARGINAL HO01D07 Halobacterium
halo_oligo_4678-4707_15 1 1 1 15 HO01D01 1 D 1 aroE VNG0382G 5569 GTCCAGCGCTCGAACGCCTCGGCACCCTGATAGAGCAGCATCCACGCGCCGTCGATCGTGGTTGCGCCGG 85.87 2003-01 Operon 110um covalent ssDNA MARGINAL HO01D01 Halobacterium
halo_oligo_4678-4707_16 1 1 1 16 HO01D01 1 D 1 aroE VNG0382G 5569 GTCCAGCGCTCGAACGCCTCGGCACCCTGATAGAGCAGCATCCACGCGCCGTCGATCGTGGTTGCGCCGG 85.87 2003-01 Operon 110um covalent ssDNA MARGINAL HO01D01 Halobacterium
halo_oligo_4678-4707_17 1 1 2 1 HO01P19 1 P 19 VNG0482H VNG0482H 5647 CGAGGTATGCGAGCAGATGGGCCCCCACGCCTCGCCCCCGCCAGTCGTCGAGCACGCCGATGTTCGTGAA 85.87 2003-01 Operon 110um covalent ssDNA MARGINAL HO01P19 Halobacterium
halo_oligo_4678-4707_18 1 1 2 2 HO01P19 1 P 19 VNG0482H VNG0482H 5647 CGAGGTATGCGAGCAGATGGGCCCCCACGCCTCGCCCCCGCCAGTCGTCGAGCACGCCGATGTTCGTGAA 85.87 2003-01 Operon 110um covalent ssDNA MARGINAL HO01P19 Halobacterium
halo_oligo_4678-4707_19 1 1 2 3 HO01P13 1 P 13 phoU VNG0451G 5623 GCGACCGGCTGCTGGAGCGCGAGCAGGTCGATGCAGTCGTCTTCCAGATCCAGATACAGCTGGTTGATCT 82.36 2003-01 Operon 110um covalent ssDNA MARGINAL HO01P13 Halobacterium
halo_oligo_4678-4707_20 1 1 2 4 HO01P13 1 P 13 phoU VNG0451G 5623 GCGACCGGCTGCTGGAGCGCGAGCAGGTCGATGCAGTCGTCTTCCAGATCCAGATACAGCTGGTTGATCT 82.36 2003-01 Operon 110um covalent ssDNA MARGINAL HO01P13 Halobacterium

Total number of rows: 10752

Table truncated, full table size 2230 Kbytes.




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