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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 24, 2010 |
| Title |
FSU/NimbleGen Human 2.1M Whole Genome Tiling |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
NimbleGen
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| |
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| Description |
Build: Hg18, NCBI 36
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| |
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| Submission date |
Jan 25, 2010 |
| Last update date |
Mar 24, 2010 |
| Contact name |
Tyrone Ryba |
| Organization name |
Florida State University
|
| Department |
Biological Science
|
| Lab |
David Gilbert
|
| Street address |
319 Stadium Dr.
|
| City |
Tallahassee |
| State/province |
FL |
| ZIP/Postal code |
32306 |
| Country |
USA |
| |
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| Samples (46)
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GSM500932, GSM500933, GSM500934, GSM500935, GSM500936, GSM500937
GSM500938, GSM500939, GSM500940, GSM500941, GSM500942, GSM500943, GSM500944, GSM751473, GSM751474, GSM751475, GSM751476, GSM751477, GSM751478, GSM751479, GSM751480, GSM751481, GSM751482, GSM751483, GSM751484, GSM751485, GSM751486, GSM751487, GSM751488, GSM751489, GSM751490, GSM751491, GSM751492, GSM751493, GSM751495, GSM751496, GSM751498, GSM751499, GSM751500, GSM751501, GSM751502, GSM751503, GSM751504, GSM751505, GSM751506, GSM751507
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| Series (4)
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| GSE20027 |
Evolutionarily conserved replication timing profiles distinguish cell types and predict long range chromatin interaction |
| GSE25893 |
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants |
| GSE30312 |
A comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants (NimbleGen 2.1M) |
| GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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| Data table header descriptions |
| ID |
|
| CHR |
Chromosomal location of oligo (Hg18, NCBI 36) |
| RANGE_GB |
GenBank Accession number |
| RANGE_START |
Chromosomal start position of oligo (Hg18, NCBI 36) |
| RANGE_END |
Chromosomal end position of oligo (Hg18, NCBI 36) |
| SEQUENCE |
Probe Sequence |
| SPOT_ID |
|
| Data table |
| ID |
CHR |
RANGE_GB |
RANGE_START |
RANGE_END |
SEQUENCE |
SPOT_ID |
| CHR01FS000017781 |
chr1 |
NC_000001.9 |
17781 |
17841 |
TTTTTCAACATCAAAACACTAGCTTGAGATCAAGCCCAGACTTGGATCTGTCGTCTGAAT |
|
| CHR01FS000030659 |
chr1 |
NC_000001.9 |
30659 |
30719 |
AGGGCACATTCTTGCTGTGGCCATCAAGAGACTGTATAAATTCTATGACTTGTAGTTGTC |
|
| CHR01FS000031123 |
chr1 |
NC_000001.9 |
31123 |
31183 |
TTTATCCAGTGCTTCTGCTAGTCTAGTTCACTTCCAAAGACCCATGATTACCATGGCCCT |
|
| CHR01FS000032108 |
chr1 |
NC_000001.9 |
32108 |
32168 |
ACTTTATTCAAGAGCCTATTGTGCAAGCATAAGTGGCTGAGTCAGGTTCTCAACTCTGCT |
|
| CHR01FS000036566 |
chr1 |
NC_000001.9 |
36566 |
36626 |
GCAATCATGTAGACATCCTGATTCCAGACAATGTGTCTGGAGGCAGGGTTTACAGGACTT |
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| CHR01FS000037196 |
chr1 |
NC_000001.9 |
37196 |
37256 |
TGAATGGGAAGAAATCAAGAATAGTTATACGAATATCACCATTGCATTAAAGCTCTCTTC |
|
| CHR01FS000038109 |
chr1 |
NC_000001.9 |
38109 |
38169 |
CATTCCCTCTGTATGCCATATTTGATAAAGCATTTGATAATCTTAGTCAATGCCTGGGCC |
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| CHR01FS000039532 |
chr1 |
NC_000001.9 |
39532 |
39592 |
TGAAGTCAGGAGACACACATTCTATCTGATTTTCTACATTATCTGTTTGAAAAGGTTACC |
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| CHR01FS000040816 |
chr1 |
NC_000001.9 |
40816 |
40876 |
GTACTTCTAATTTTTCACTTTACATCACATAATGAATGGATCCAAATATGTTATGGATAG |
|
| CHR01FS000042256 |
chr1 |
NC_000001.9 |
42256 |
42316 |
CCTCACTTTCTTCCTTCAGAATACTAAAGCTTCTTCTCTACTGACTGAGTCAATGGCCAA |
|
| CHR01FS000042535 |
chr1 |
NC_000001.9 |
42535 |
42595 |
CCTACAGTTCTGACTTTTTCACTAACTGCAGCATCATTTCTTTTCCAAGATGCATCATAC |
|
| CHR01FS000043737 |
chr1 |
NC_000001.9 |
43737 |
43797 |
GCTTTGTCAGTTTACGATGCTATTTCAGTTTTGTGCTCAGATTTGAGTGATTGCAGGAAG |
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| CHR01FS000045589 |
chr1 |
NC_000001.9 |
45589 |
45649 |
CTCTTTTGTAAGACTAACAGCCCTCAAAATTTTTCATTCAGTGATGTCTTCCTCATTGCA |
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| CHR01FS000046716 |
chr1 |
NC_000001.9 |
46716 |
46776 |
GCTCAATACAGGTCCTTTTGTGAATGATTACCTCACCCTCATGGAAACACACTCTTGTTA |
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| CHR01FS000047089 |
chr1 |
NC_000001.9 |
47089 |
47149 |
GGTGCCATAAGTGAAGGTATCTCTGTCCACCCTGAATATATTTTCACTCCCTCATCTCAG |
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| CHR01FS000048466 |
chr1 |
NC_000001.9 |
48466 |
48526 |
TCTGAACATCCTTTTTGTTTAATATAAGTCTGCATTTCCTGTTTGAAGATATGTGTCCCA |
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| CHR01FS000049283 |
chr1 |
NC_000001.9 |
49283 |
49343 |
TCCATGTTTGCAGTGACAATATACATAAACAGTGTATGAAAACTCAAGTAAAATCTACTC |
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| CHR01FS000050787 |
chr1 |
NC_000001.9 |
50787 |
50847 |
TTCCCACTTCATCATTACTAACCTCACTCACTCTGAACTTGATGAGAGCACCTGAGCATT |
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| CHR01FS000052308 |
chr1 |
NC_000001.9 |
52308 |
52368 |
TAGGCACATGTAGGAAACAGCTTTCAGAGATGCCTTAACCGTAATTATGCATTTGTATTC |
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| CHR01FS000052784 |
chr1 |
NC_000001.9 |
52784 |
52844 |
TTCAGAGTCTTCCCTTCTATCTGATTCAGTGGACCAAGTAAATGACTCTCTGGTAACAGA |
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Total number of rows: 2161679
Table truncated, full table size 243307 Kbytes.
| Supplementary data files not provided |
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