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Platform GPL9982 Query DataSets for GPL9982
Status Public on Apr 02, 2010
Title Arabidopsis thaliana 32.7K Ath_Agilent_v1_Riechmann
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Arabidopsis thaliana
Manufacturer Agilent
Manufacture protocol Custom-commercial array manufactured by Agilent (eArray) using its SurePrint technology (In Situ Synthesis Printing). http://www.chem.agilent.com/en-us/products/instruments/dnamicroarrays/pages/gp557.aspx
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Contributor(s) Riechmann JL, Mathog D
Submission date Jan 26, 2010
Last update date Jun 14, 2013
Contact name Jose Luis Riechmann
E-mail(s) [email protected]
Organization name Center for Research in Agricultural Genomics
Street address Campus UAB - Edifici CRAG
City Bellaterra
State/province Barcelona
ZIP/Postal code 08193
Country Spain
 
Samples (23) GSM503916, GSM503917, GSM503918, GSM503919, GSM503920, GSM503921 
Series (3)
GSE20138 Ath_Agilent_v1_Riechmann array expression profile apetala1
GSE20139 Ath_Agilent_v1_Riechmann array expression profile AP1-GR ap1cal inflorescences - time series (hours)
GSE20184 Orchestration of floral initiation by APETALA1

Data table header descriptions
ID
CLONE ID Identifier of the gene or sequence represented by a given array element
SEQUENCE_NAMES Standardized name and acronyms of the gene or sequence represented by a given array element
SEQUENCE_DESCRIPTION Description of gene or gene product represented by an element
SEQUENCE probe sequence
CLONE_ID
SPOT_ID

Data table
ID CLONE ID SEQUENCE_NAMES SEQUENCE_DESCRIPTION SEQUENCE CLONE_ID SPOT_ID
CUST_1_PI349046159 gb_AT_4_-_2_15704816-15704920 gb_AT_4_-_2_15704816-15704920 Unknown CTGAGAGTAAATTTGGAGGGAGGATGCAGAATGGCAGAGGACACGACAAGTCTATTCTAA --unknown
CUST_1_PI355422546 AT5G04060.1 AT5G04060.1 dehydration-responsive protein-related TAAACATTTTTGTCCCACATTGAACACTCTGCATAAGCCCAAAGTGAGTCCATTTGTTCT AT5G04060.1
CUST_10_PI349046159 gb_AT_5_-_1_3735051-3735194 gb_AT_5_-_1_3735051-3735194 Unknown AAGATTGCATCTCTCTTTGCTCAAGGAATCATTGTCGGATTTTTCAAGCAGAAAAAGTAG --unknown
CUST_10_PI355422546 AT4G00440.1 AT4G00440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45900.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91371.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain RNASE H1 SMALL SUBUNIT (AYP1)-RELATED (PTHR21726:SF4) GGGATGTGATAGTGTTTGTTTGAAATCGGTTTGTGTAACATTTTCAGAGTTTGACATAAC AT4G00440.1
CUST_100_PI349046159 gb_AT_5_+_0_13034191-13034352 gb_AT_5_+_0_13034191-13034352 Unknown CAAGTTTTCTTCAAACACGGACAAAGGGTCTTGATCATGGGCAGAGTTTCTCGATGGTAA --unknown
CUST_100_PI355422546 AT4G11440.1 AT4G11440.1 binding CCTAATACGTCAGCTCTCTCTGGCACAAAACAAAAGATGGAGATAGCCTTAAATCGTTAA AT4G11440.1
CUST_1000_PI349046159 gb_AT_5_-_2_6212882-6212980 gb_AT_5_-_2_6212882-6212980 Unknown ATCATTTTCATACGCAAAGGCTGATGAAGGATGCTGGATGCGTGTTGGCTCTGATAGGAA --unknown
CUST_1000_PI355422546 AT5G66050.1 AT5G66050.1 similar to wound-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G19660.2); similar to Os08g0357000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061624.1); similar to putative wound inductive gene [Oryza sativa (japonica cultivar-group)] (GB:BAD03758.1); contains InterPro domain Protein of unknown function DUF151; (InterPro:IPR003729) GGATCGCAGGATGTATTCAAAGTAAATGAAAGATGTATGAATAACCTGAGGGAATGTGTA AT5G66050.1
CUST_10000_PI355422546 AT1G20790.1 AT1G20790.1 F-box family protein GTCATCTCATCTGTAATGGCTATTATGGGTCTGGTTAATCGTACTTTGTCTTTTATTAAC AT1G20790.1
CUST_10001_PI355422546 AT5G16130.1 AT5G16130.1 Cytoplasmic ribosomal protein gene familyS7RPS7C 40S ribosomal protein S7 (RPS7C) ATTTCAACTGCAACACATTGAGAAGAATCTATAGGTCGATGATGAAGCCCCTTCTTAGTG AT5G16130.1
CUST_10002_PI355422546 AT1G72530.1 AT1G72530.1 plastid developmental protein DAG, putative TGGCTACGAGATCAAACTGATGAGGATGCTAAAAGCGGAGTAGTCAAAAAGAAGCATAGG AT1G72530.1
CUST_10003_PI355422546 AT3G44330.1 AT3G44330.1 EF-hand containing proteins:Group IIsimilar to PREDICTED: similar to nicalin [Tribolium castaneum] (GB:XP_971811.1); similar to Os08g0102100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060766.1); contains InterPro domain Nicastrin; (InterPro:IPR008710) CGTGGGCGGCAAAGAAAATAAGATCGAACATTGTAGTTTTTTCTTTGGTTTAAATTAGTC AT3G44330.1
CUST_10004_PI355422546 AT2G14910.1 AT2G14910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14970.1); similar to seed maturation protein PM23 [Glycine max] (GB:AAF21309.1) GCTTGTTGGATACCGTAAACAAAATCCAACACTTCCGTTATTCGATAAACAAGCAATTTT AT2G14910.1
CUST_10005_PI355422546 AT2G32415.1 AT2G32415.1 3'-5' exonuclease/ nucleic acid binding CTTCTGTAGACCTCTGTACTTTGTTTTAGCCAAAAGTCTGATCCTTTTAAAATTGCAGTA AT2G32415.1
CUST_10006_PI355422546 AT3G13710.1 AT3G13710.1 prenylated rab acceptor (PRA1) family protein CTATTTGTTGTCATGAAGATGAATCCTTCTATGCTGACACTGACTTAAGAGATACATATG AT3G13710.1
CUST_10007_PI355422546 AT1G48230.1 AT1G48230.1 Organic Solute CotransportersPutative phosphate/phosphoenolpyruvate translocator protein familyphosphate translocator-related AGTTCTGACTTCTGAGTGTGTGGCCCTGTATTTGATATTTTCCCTTTCTATATTAGCTGG AT1G48230.1
CUST_10008_PI355422546 AT2G40710.1 AT2G40710.1 similar to HHP4 (heptahelical protein 4), receptor [Arabidopsis thaliana] (TAIR:AT4G37680.1); similar to Haemolysin-III related family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94486.1); similar to Os03g0232900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049471.1); contains InterPro domain Hly-III related proteins; (InterPro:IPR004254) TCACACGACATGTTATGAGATTTTGATGGGTTTGCTTTATGGGTTAGGAGCTCTGGTTTA AT2G40710.1
CUST_10009_PI355422546 AT4G12510.1 AT4G12510.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein CCTTCTGGTTTCGTATGTGCTTGATATATCTATCCACCCTTCGATTGATTATAATGTTTA AT4G12510.1
CUST_1001_PI349046159 gb_AT_1_+_0_22526224-22526331 gb_AT_1_+_0_22526224-22526331 Unknown GGATGTGACAAGATTGAAGGAAATCTGAGGTTAAGACTTAAATCTTTATGGAACTGGATT --unknown
CUST_1001_PI355422546 AT4G36630.1 AT4G36630.1,EMB2754 EMB2754 (EMBRYO DEFECTIVE 2754); small GTPase regulator GATGGTCTTGACTCTTGACAAAACCAGTTTGGCTCTTGTTGTAAAATCTGTTAGTTTATA AT4G36630.1

Total number of rows: 32672

Table truncated, full table size 6610 Kbytes.




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Supplementary file Size Download File type/resource
GPL9982_017784_G2_D_F_20071003.txt.gz 2.5 Mb (ftp)(http) TXT

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