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Series GSE101290 Query DataSets for GSE101290
Status Public on Jan 02, 2018
Title INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We performed RNA-seq across the yeast metabolic cycle (YMC) in wild-type and a strain lacking ARP5, a central component of the INO80 chromatin remodelling complex. We also perform ATAC-seq on the same samples to examine chromatin architecture across the YMC.
 
Overall design RNA-seq and ATAC-seq in wild-type and arp5∆ yeast
 
Contributor(s) Gowans GJ, Morrison AJ
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Submission date Jul 12, 2017
Last update date Mar 13, 2019
Contact name Graeme Gowans
E-mail(s) [email protected]
Organization name Stanford University
Department Biology
Lab Ashby Morrison
Street address Gilbert Building, 371 Serra Mall
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platforms (2)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (51)
GSM2700667 wt1A_RNA-seq
GSM2700668 wt1B_RNA-seq
GSM2700669 wt2A_RNA-seq
Relations
BioProject PRJNA393962
SRA SRP111674

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE101290_RAP_FPKM.csv.gz 753.5 Kb (ftp)(http) CSV
GSE101290_fpkmMatrix.csv.gz 913.8 Kb (ftp)(http) CSV
GSE101290_normalized_atac_counts.csv.gz 718.7 Kb (ftp)(http) CSV
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Processed data are available on Series record
Raw data are available in SRA

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