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Series GSE105439 Query DataSets for GSE105439
Status Public on Sep 07, 2020
Title Effects of the novel PI3K δ/γ inhibitor RP6530 on global gene expression in Hodgkin Lymphoma cell lines.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Tumor-associated macrophages (TAMs) are involved in the pathogenesis of Hodgkin lymphoma (HL) and correlate with negative prognosis. The phosphatidylinositol 3-kinase (PI3K) mediates tumor and endothelial cell survival, and macrophage activation. As PI3Kδ and PI3Kγ are constitutively activated in HL, we describe RP6530, a novel PI3Kδ/γ inhibitor, in clinical development for HL and NHL. RP6530 exhibits anti-proliferative and cytotoxic activity both in vitro in HL cell lines and in vivo in HL xenograft mouse models. By inhibiting the metabolic regulator Pyruvate Kinase M2 (PKM2), RP6530 downregulates lactic acid metabolism in HL cells switching the activation of macrophages from an immunosuppressive M2-like phenotype to a more inflammatory M1-like state. RP6530 reshapes the tumor microenvironment (TME), through the re-polarization of TAMs into pro-inflammatory macrophages and the inhibition of tumor vasculature. These data demonstrate the central role of PI3K δ/γ inhibition for targeting HL cells and TME, indicating RP6530 as a novel therapeutic opportunity for HL patients.
 
Overall design Profiling of the transcriptome of L-540 and KM-H2 Hodgkin lymphoma cell lines after in vitro treatment with the novel PI3Kδ/γ inhibitor RP6530 (100nM and 10uM) for 6 hours and RP6530 (10uM) for 24 hours and subjected to polyA-RNA sequencing using Illumina platform. Two biological replicates were profiled for each cell type and time point.
 
Contributor(s) Serio S, Locatelli SL, Carlo-Stella C
Citation(s) 30352904
Submission date Oct 20, 2017
Last update date Jul 25, 2021
Contact name Simone Serio
E-mail(s) [email protected]
Organization name Humanitas Research Hospital
Department Cardiovascular Medicine
Street address Via Alessandro Manzoni, 56
City Rozzano
State/province Milano
ZIP/Postal code 20089
Country Italy
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (24)
GSM2826004 KMH2_C1_10uM_6h
GSM2826005 KMH2_C1_10uM_24h
GSM2826006 KMH2_C2_10uM_6h
Relations
BioProject PRJNA415182
SRA SRP120605

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Supplementary file Size Download File type/resource
GSE105439_RAW.tar 8.0 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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