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Series GSE107393 Query DataSets for GSE107393
Status Public on Nov 28, 2017
Title Metabolic and Expression Regulation in Caldicellulosiruptor bescii
Organism Caldicellulosiruptor bescii
Experiment type Expression profiling by high throughput sequencing
Summary Two single-gene knockout strains (ΔfapR and Δcra) and their common parent strain (JWCB005) were each grown in three conditions of elevated osmolarity which produced a moderate growth defect in all strains and relative growth phenotypes between the strains.
 
Overall design A total of 27 samples were analyzed. All samples were sequenced on one sequencing lane. Two single-gene knockout strains (ΔfapR and Δcra) and their common parent strain (JWCB005) were each grown in three conditions of elevated osmolarity which produced a moderate growth defect in all strains and relative growth phenotypes between the strains. Sacrifical batch samples were taken at mid log phase of growth for RNA sequencing.
 
Contributor(s) Sander K, Chung D, Westpheling J, Klingeman D, Rodriguez M, Davison BH, Brown SD
Citation(s) 32190115
Submission date Nov 27, 2017
Last update date Mar 24, 2020
Contact name Kyle Sander
E-mail(s) [email protected]
Organization name University of Tennessee/Oak Ridge National Laboratory
Department Biosciences
Lab Dr. Steven Brown
Street address 1 Bethel Valley Road, MS 6038
City Oak Ridge
State/province TN
ZIP/Postal code 37830
Country USA
 
Platforms (1)
GPL23843 Illumina HiSeq 2500 (Caldicellulosiruptor bescii)
Samples (27)
GSM2865855 JWCB005 - Glucose - 1
GSM2865856 JWCB005 - Glucose - 2
GSM2865857 JWCB005 - Glucose - 3
Relations
BioProject PRJNA419959
SRA SRP125703

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE107393_DEseq2_input.xlsx 1.1 Mb (ftp)(http) XLSX
GSE107393_binary_comparisons_glu_gly_nacl_fapR_cra.xlsx 1.6 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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