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Series GSE110127 Query DataSets for GSE110127
Status Public on Apr 03, 2018
Title Differential Regulation of Genes Involved in Root Morphogenesis and Cell Wall Modification is Associated with Salinity Tolerance in Chickpea
Organism Cicer arietinum
Experiment type Expression profiling by high throughput sequencing
Summary In this study, the root tissues from the salt tolerant genotype (JG 11) and the salt sensitive genotype (ICCV 2) were analyzed using RNA sequencing to identify genes/pathways associated with salt tolerance/sensitivity in the both genotypes.
 
Overall design The salt sensitive and salt tolerant genotypes were subject to 40 mM of NaCl treatment and the root tissues at two developmental stages were collected and sequenced to profile the differential genes expression in response to the salt stress.
 
Contributor(s) Mantri N, Kaashyap M
Citation(s) 29555923
Submission date Feb 05, 2018
Last update date Apr 03, 2018
Contact name Nitin Mantri
E-mail(s) [email protected]
Organization name RMIT University
Department School of Science
Street address Plenty Road
City Bundoora
State/province Victoria
ZIP/Postal code 3083
Country Australia
 
Platforms (1)
GPL22390 Ion Torrent PGM (Cicer arietinum)
Samples (24)
GSM2977861 ICCV2 Genotype Control 1 Vegetative stage
GSM2977862 ICCV2 Genotype Control 2 Vegetative stage
GSM2977863 ICCV2 Genotype Control 3 Vegetative stage
Relations
BioProject PRJNA432923
SRA SRP132178

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE110127_RAW.tar 2.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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