The changes in transcript titers are described for different Drosophila cells following 5 hr treatment with 20-hydroxyecdysone. Keywords: hormone response
Overall design
RNA from ecdysone-treated cells was compared to RNA from cells treated with carrier alone. A total of 3-13 slides were analyzed for each cell line. Each slide represents separate biological sample; dye-swaps were included.
Data correspond to accession GSE11167, subseries CME L1. Significance was calculated by ArrayLOD (Cherbas et al., in preparation), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be <1%. M values are an intensity-weighted average of M values from 4 biological replicate slides. header descriptions
ID_REF
M (weighted average)
Qvalue
Data table
ID_REF
M (weighted average)
Qvalue
2
0.3
6.36E-05
27
-0.4
0.095622223
40
0.7
0
46
1.4
0.012430266
50
2.4
0
52
1.6
0.093820806
60
-0.7
0.01627774
68
-0.9
0
76
-1.0
0
78
-0.8
9.03E-06
87
-0.5
5.43E-05
92
-0.4
0.04932043
96
-0.2
0.074708695
103
-0.4
0.049367182
117
-0.6
0.098445797
121
-0.4
0.007491445
122
5.6
0
129
-0.3
0.043329613
140
-0.5
0.094232984
143
-0.8
9.21E-08
Total number of rows: 1900
Table truncated, full table size 36 Kbytes.
Data correspond to accession GSE11167, subseries ML-DmBG2-c2. Significance was calculated by ArrayLOD (Cherbas et al., in preparation), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be <1%. M values are an intensity-weighted average of M values from 3 biological replicate slides. header descriptions
ID_REF
M (weighted average)
Qvalue
Data table
ID_REF
M (weighted average)
Qvalue
50
2.5
0
76
-0.4
0.003926275
122
5.0
0
143
-0.4
0.007776804
203
-0.3
0.007954079
244
0.7
0.007228321
527
-1.0
1.37E-11
571
2.3
0
603
-1.4
0
613
-0.6
2.01E-11
625
2.2
0
674
0.9
0
857
1.3
8.57E-05
897
-0.9
0.00024047
959
1.9
4.11E-13
968
3.2
0
1029
-0.6
1.10E-09
1174
-0.9
0
1246
-1.5
5.45E-07
1353
5.0
0
Total number of rows: 235
Table truncated, full table size 4 Kbytes.
Data correspond to accession GSE11167, subseries ML-DmD11. Significance was calculated by ArrayLOD (Cherbas et al., in preparation), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be <1%. M values are an intensity-weighted average of M values from 3 biological replicate slides. header descriptions
ID_REF
M (weighted average)
Qvalue
Data table
ID_REF
M (weighted average)
Qvalue
2
0.3
2.42E-05
22
-0.9
0.000744311
29
-0.6
0.006373018
30
-2.7
0
31
0.6
0.004879071
40
1.3
0
50
2.3
0
52
1.9
0.001661957
58
-1.5
0.003229725
60
-1.5
6.50E-15
64
-0.4
0.001844438
65
1.1
9.45E-05
68
-1.2
0
76
-0.4
0.006457367
78
-0.9
0.000143813
79
-2.0
0.008370307
88
0.5
0.004714231
103
-0.6
0.000926504
119
-1.2
2.92E-14
121
-1.0
1.91E-13
Total number of rows: 1983
Table truncated, full table size 36 Kbytes.
Data correspond to accession GSE11167, subseries CME W1 Cl.8+. Significance was calculated by ArrayLOD (Cherbas et al., in preparation), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be <1%. M values are an intensity-weighted average of M values from 4 biological replicate slides. header descriptions
ID_REF
M (weighted average)
Qvalue
Data table
ID_REF
M (weighted average)
Qvalue
45
0.8
0.000799138
50
1.7
0
59
-0.5
0.005661549
65
-1.3
0
68
-0.6
0.000115286
76
-0.6
0.000145207
121
-0.8
1.60E-05
122
4.0
0
126
0.7
0.002174715
132
-1.3
0.008413653
160
0.5
0.001696864
166
-0.6
0.000468086
180
1.4
0.000817276
182
-0.6
0.001105759
187
-1.0
7.35E-06
195
0.6
0.000871918
198
-1.7
0
216
1.0
5.91E-12
224
0.6
0.000973277
227
-0.6
0.00077229
Total number of rows: 1529
Table truncated, full table size 28 Kbytes.
Data correspond to accession GSE11167, subseries ML-DmBG3-c2. Significance was calculated by ArrayLOD (Cherbas et al., in preparation), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be <1%. M values are an intensity-weighted average of M values from 4 biological replicate slides. header descriptions
ID_REF
M (weighted average)
Qvalue
Data table
ID_REF
M (weighted average)
Qvalue
30
-0.7
7.75E-05
45
0.9
9.03E-05
50
2.8
0
51
-0.6
0.044216317
52
1.0
7.54E-13
60
-0.5
0.002774082
62
0.5
0.001501191
65
-2.4
0
68
-0.3
0.044071416
73
0.6
0.043847161
76
-0.4
0.014350241
78
-1.1
1.57E-11
103
-0.4
0.03844915
105
-0.7
0.013771577
107
0.9
0.029513788
108
-0.4
0.088119937
122
2.3
0
123
-0.5
0.013234322
126
0.8
0.000173495
132
-0.5
0.064634398
Total number of rows: 2659
Table truncated, full table size 52 Kbytes.
Data correspond to accession GSE11167, subseries ML-DmD16-c3. Significance was calculated by ArrayLOD (Cherbas et al., in preparation ), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be < 1%. M values are an intensity-weighted average of M values from 3 biological replicate slides. header descriptions
ID_REF
M (weighted average)
Qvalue
Data table
ID_REF
M (weighted average)
Qvalue
50
2.1
0
122
5.0
0
249
1.5
0
292
3.6
0
495
3.1
0
527
-1.1
0
571
2.1
0
613
-0.9
0
625
2.2
0
853
2.7
0
1144
2.1
0
1174
-0.7
0
1601
1.8
0
1930
1.9
0
2036
2.1
0
2216
-1.4
0
2227
1.7
0
2473
-1.1
0
2624
-1.4
0
2726
2.3
0
Total number of rows: 791
Table truncated, full table size 14 Kbytes.
Data correspond to accession GSE11167, subseries Kc167. Significance was calculated by ArrayLOD (Cherbas et al., in preparation), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be <1%. M values are an intensity-weighted average of M values from 13 biological replicate slides. header descriptions
ID_REF
M (weighted average)
Qvalue
Data table
ID_REF
M (weighted average)
Qvalue
2
0.2
5.67E-05
20
0.3
0.00454366
40
0.4
3.11E-12
50
0.8
0
65
-0.8
8.49E-07
68
-0.2
0.00358576
78
-0.4
0.000139994
122
2.9
0
140
-1.0
3.11E-05
143
-0.5
6.62E-11
182
-0.4
0.000102364
198
-0.9
3.16E-09
208
-0.5
2.95E-08
211
1.0
0
237
-0.3
0.005356486
244
0.4
2.21E-07
250
-0.5
5.06E-08
281
-0.3
0.006937351
283
3.1
0
293
0.4
0.001328783
Total number of rows: 1138
Table truncated, full table size 20 Kbytes.
Data correspond to accession GSE11167, subseries ML-DmD4-c1. Significance was calculated by ArrayLOD (Cherbas et al., in preparation), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be <1%. M values are an intensity-weighted average of M values from 4 biological replicate slides. header descriptions
ID_REF
M (weighted average)
Qvalue
Data table
ID_REF
M (weighted average)
Qvalue
27
1.3
0
50
2.7
0
52
1.4
0
59
-0.5
0.001343459
60
0.9
4.23E-07
62
0.7
0.000122808
63
-1.5
4.74E-06
65
-1.6
0
68
-0.5
0.000282474
76
-1.0
4.55E-09
78
-0.8
0.00271463
96
-0.6
1.61E-05
142
0.6
0.000973541
143
-0.9
2.56E-08
146
0.7
0.000205127
154
-0.5
0.004027779
166
-0.5
0.005284536
168
-0.9
0.001418776
174
0.8
4.15E-06
188
-0.5
0.001009292
Total number of rows: 1948
Table truncated, full table size 36 Kbytes.
Data correspond to accession GSE11167, subseries ML-DmD20-c2. Significance was calculated by ArrayLOD (Cherbas et al., in preparation), a technique which uses empirically determined measures of noise as a function of A in calculating probabilities. Probes are included in the table if FDR is calculated to be <1%. M values are an intensity-weighted average of M values from 5 biological replicate slides. header descriptions
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