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Series GSE112911 Query DataSets for GSE112911
Status Public on Apr 11, 2018
Title Genome-wide analysis of Differential Responses of Pseudomonas aeruginosa PAO1 and PA14 cells to Interfacial Stress
Organisms Pseudomonas aeruginosa PAO1; Pseudomonas aeruginosa PA14
Experiment type Expression profiling by high throughput sequencing
Summary Analysis of gene expression level of P. aeruginosa confined to Hexadecane-water interfaces. The hypothesis tested in the present study was to determine if interfacial confinements at hexadecane-water affect microbial metabolism through regulation of stress response.
 
Overall design Total RNA obtained from isolated PAO1 and PA14 cells subjected to 1 hour of confinement at Hexadecane-water interfaces. The Total expression level was compared to the untreated control (exposed for 1 hour to 154 mM NaCl solution only).
 
Contributor(s) Niepa TH
Citation(s) 29259206
Submission date Apr 10, 2018
Last update date Jul 14, 2018
Contact name Tagbo Niepa
E-mail(s) [email protected]
Phone 4123834265
Organization name University of Pittsburgh
Department Chemical and Petroleum Engineering
Lab MicroBiointerface Lab
Street address 3700 OHara Street, 926 Benedum Hall
City Pittsburgh
State/province PA
ZIP/Postal code 15261
Country USA
 
Platforms (2)
GPL18782 Illumina HiSeq 2500 (Pseudomonas aeruginosa PAO1)
GPL21807 Illumina HiSeq 2500 (Pseudomonas aeruginosa PA14)
Samples (12)
GSM3091026 PAO1 Control (exposed to NaCl solution for 1h)_1
GSM3091027 PAO1 Control (exposed to NaCl solution for 1h)_2
GSM3091028 PAO1 Control (exposed to NaCl solution for 1h)_3
Relations
BioProject PRJNA449493

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112911_PA14_TranscriptRawReadCounts.txt.gz 98.7 Kb (ftp)(http) TXT
GSE112911_PAO1_TranscriptRawReadCounts.txt.gz 91.5 Kb (ftp)(http) TXT
Raw data are available in SRA
Processed data are available on Series record

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