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GEO accession:
Series GSE116495
Query DataSets for GSE116495
Status
Public on May 13, 2021
Title
The effect of STAG2 loss in Ewing sarcoma
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34129824
Submission date
Jul 02, 2018
Last update date
Jul 17, 2021
Contact name
Gabriela Alexe
E-mail(s)
[email protected]
Organization name
Broad Institute
Department
Computational Biology and Bioinformatics
Street address
415 Main St.
City
Cambridge
State/province
MA
ZIP/Postal code
02142
Country
USA
Platforms (5)
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GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
GPL21290
Illumina HiSeq 3000 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (38)
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GSM3240304
A673 STAG2 WT rep1
GSM3240305
A673 STAG2 WT rep2
GSM3240306
A673 STAG2 WT rep3
GSM3240307
A673 STAG2 KO sg1 rep1
GSM3240308
A673 STAG2 KO sg1 rep2
GSM3240309
A673 STAG2 KO sg4 rep1
GSM3240310
A673 STAG2 KO sg4 rep2
GSM3240311
TC71 STAG2 WT rep1
GSM3240312
TC71 STAG2 WT rep2
GSM3240313
TC71 STAG2 KO sg1 rep1
GSM3240314
TC71 STAG2 KO sg1 rep2
GSM3240315
TC71 STAG2 KO sg4 rep1
GSM3240316
TC71 STAG2 KO sg4 rep2
GSM3240319
H3K27Ac on A673 STAG2 WT
GSM3240321
Input on A673 STAG2 WT matched for H3K27Ac
GSM3240325
H3K27Ac on A673 STAG2 null
GSM3240327
Input on A673 STAG2 null matched for H3K27Ac
GSM3240329
ATAC-seq on A673 STAG2 WT
GSM3240330
ATAC-seq on A673 STAG2 null
GSM5049890
EWS/FLI1 on A673 [BA_A673_FLI1]
GSM5049891
Input on A673 [BA_A673_Input]
GSM5049892
EWS/FLI1 on A673 STAG2 WT [BA_A673_STAG2WT_FLI1]
GSM5049893
EWS/FLI1 on A673 STAG2 KO [BA_A673_STAG2KO_FLI1]
GSM5049894
SA1 on A673 STAG2 WT [BA_A673_STAG2WT_SA1]
GSM5049895
SA1 on A673 STAG2 KO [BA_A673_STAG2KO_SA1]
GSM5049896
SA2 on A673 STAG2 WT [BA_A673_STAG2WT_SA2]
GSM5049897
SA2 on A673 STAG2 KO [BA_A673_STAG2KO_SA2]
GSM5049898
SMC1A on A673 STAG2 WT [BA_A673_STAG2WT_SMC1A]
GSM5049899
SMC1A on A673 STAG2 KO [BA_A673_STAG2KO_SMC1A]
GSM5049900
H3K27me3 on A673 STAG2 WT [BA_A673_STAG2WT_H3K27me3]
GSM5049902
Input on A673 STAG2 WT [BA_A673_STAG2WT_Input]
GSM5049903
Input on A673 STAG2 KO [BA_A673_STAG2KO_Input]
GSM5059681
HiChIP SMC1A A673 STAG2 WT Replicate 1
GSM5059682
HiChIP SMC1A A673 STAG2 WT Replicate 2
GSM5059683
HiChIP SMC1A A673 STAG2 KO Replicate 1
GSM5059684
HiChIP SMC1A A673 STAG2 KO Replicate 2
GSM5267697
H3K27me3 on A673 STAG2 KO [BA_A673_STAG2_sg1KO_H3K27me3]
GSM5267698
H3K4me3 on A673 STAG2 WT [A673_STAG2WT_H3K4me3]
This SuperSeries is composed of the following SubSeries:
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GSE116492
The effect of STAG2 loss in Ewing sarcoma [RNA-Seq]
GSE116494
The effect of STAG2 loss in Ewing sarcoma [ATAC-Seq]
GSE165783
The effect of STAG2 loss in Ewing sarcoma [ChIP-seq]
GSE165977
The effect of STAG2 loss in Ewing sarcoma [HiChIP]
Relations
BioProject
PRJNA478839
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE116495_RAW.tar
6.4 Gb
(http)
(custom)
TAR (of BW, TXT)
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