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Series GSE118949 Query DataSets for GSE118949
Status Public on Sep 01, 2020
Title FGF Signaling in the Self-Renewal of Colon Cancer Organoids
Organism Homo sapiens
Experiment type Expression profiling by array
Summary With their ability to self-renew and simultaneously fuel the bulk tumor mass with highly proliferative tumor cells, cancer stem cells (CSC) are supposedly driving cancer progression. However, the CSC-phenotype in colorectal cancer (CRC) is unstable and dependent on environmental cues. Since FGF2 is essential for adult and embryonic stem cell culture to maintain self-renewal, we investigated its role in advanced CRC using tumor-derived organoids as experimental model. We found that FGF-Receptor (FGFR) inhibition prevents organoid formation in very early expanding cells but induces cyst formation when applied to already established organoids. Comprehensive transcriptome analyses revealed that the induction of the transcription factor activator protein-1 (AP-1) together with a MAPK stimulation was most prominent after FGFR-inhibition. These effects resemble mechanisms of an acquired resistance against other described tyrosine kinase inhibitors such as targeted therapies against the EGF-Receptor. Furthermore, we detected elevated expression levels of several self-renewal and stemness-associated genes in organoid cultures with active FGF2 signaling. The combined data assumes that CSC are a heterogeneous subpopulation while self-renewal is a common feature regulated by many different pathways. Finally, we highlight the effects of FGF2 signaling as one of numerous aspects of the complex regulation of stemness in cancer.
 
Overall design The transcriptomes of colon cancer organoids with and without FGFR inhibition and human ESC lines were compared by microarray analysis (PrimeView Human Gene Expression Array, Affymetrix, Thermo Fisher Scientific).
 
Contributor(s) Wruck W, Otte J, Adjaye J
Citation(s) 31758153
Submission date Aug 22, 2018
Last update date Dec 01, 2020
Contact name Wasco Wruck
E-mail(s) [email protected]
Organization name Universitätsklinikum Düsseldorf
Street address Moorenstr. 5
City Düsseldorf
ZIP/Postal code 40225
Country Germany
 
Platforms (1)
GPL16043 GeneChip® PrimeView™ Human Gene Expression Array (with External spike-in RNAs)
Samples (9)
GSM3351761 Patient 3 CSC-Media
GSM3351762 Patient 3 SU-5402 treated
GSM3351763 Patient 4 CSC-Media
Relations
BioProject PRJNA487466

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118949_RAW.tar 25.2 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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