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GEO accession:
Series GSE128745
Query DataSets for GSE128745
Status
Public on May 13, 2019
Title
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31085178
,
33207202
Submission date
Mar 22, 2019
Last update date
Dec 08, 2020
Contact name
Nada Jabado
Organization name
McGill University
Department
Department of Pediatrics
Lab
Jabado Lab
Street address
1001 Décarie Boulevard
City
Montreal
State/province
Québec
ZIP/Postal code
H4A 3J1
Country
Canada
Platforms (4)
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GPL11154
Illumina HiSeq 2000 (Homo sapiens)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (210)
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GSM3294941
SJG5-C23
GSM3294942
G477-C6
GSM3294943
pCGBM2-C7
GSM3294944
SJG5-C16
GSM3294945
HSJ-030-C8
GSM3294946
G477
GSM3294947
BT245-C19
GSM3294948
DIPGVI-C30
GSM3294949
DIPGXIII-C14
GSM3294950
HSJ019-C4
GSM3294951
HSJ019-C7
GSM3294952
HSJ-050-C5
GSM3294953
DIPGXIII
GSM3294954
DIPGXIII-KO-C10
GSM3294955
DIPGXIII-KO-C5
GSM3294956
DIPGXIII-NKO-C12
GSM3294957
DIPGXIII-NKO-C8
GSM3294958
BT245-KO-C2P6
GSM3294959
BT245-KO-C4P6
GSM3294960
BT245-KO-C2
GSM3294961
BT245-KO-C4
GSM3294962
BT245-KO-C5P4
GSM3294963
BT245-NKO-P30
GSM3294964
BT245-NKO-P31
GSM3294965
BT245-NKO-P16
GSM3294966
BT245-NKO-P17
GSM3294967
BT245-NKO-P18
GSM3294968
BT245-DMSO-D5
GSM3294969
BT245-DMSO-D6
GSM3294970
BT245-DMSO-D7
GSM3294971
DIPGXIII-DMSO-R1
GSM3294972
DIPGXIII-DMSO-R2
GSM3294973
DIPGXIII-DMSO-R3
GSM3294974
DIPGXIII-PANO-R1
GSM3294975
DIPGXIII-PANO-R2
GSM3294976
DIPGXIII-PANO-R3
GSM3294977
DIPGXIII-5AZA-R1
GSM3294978
DIPGXIII-5AZA-R2
GSM3294979
DIPGXIII-5AZA-R3
GSM3294980
DIPGXIII-COMBO-R1
GSM3294981
DIPGXIII-COMBO-R2
GSM3294982
DIPGXIII-COMBO-R3
GSM3294983
DIPGXIII-KO-DMSO-R1
GSM3294984
DIPGXIII-KO-DMSO-R2
GSM3294985
DIPGXIII-KO-PANO-R1
GSM3294986
DIPGXIII-KO-PANO-R2
GSM3294987
DIPGXIII-KO-5AZA-R1
GSM3294988
DIPGXIII-KO-5AZA-R2
GSM3294989
DIPGXIII-KO-COMBO-R1
GSM3294990
DIPGXIII-KO-COMBO-R2
GSM3294991
BT245-PANO-R1
GSM3294992
BT245-PANO-R2
GSM3294993
BT245-5AZA-R1
GSM3294994
BT245-5AZA-R2
GSM3294995
BT245-COMBO-R1
GSM3294996
BT245-COMBO-R2
GSM3294997
BT245-KO-DMSO-R1
GSM3294998
BT245-KO-DMSO-R2
GSM3294999
BT245-KO-PANO-R1
GSM3295000
BT245-KO-PANO-R2
GSM3295001
BT245-KO-5AZA-R1
GSM3295002
BT245-KO-5AZA-R2
GSM3295003
BT245-KO-COMBO-R1
GSM3295004
BT245-KO-COMBO-R2
GSM3682783
1840
GSM3682784
2230
GSM3682785
BTTB-434
GSM3682786
PH1157
GSM3682787
PL150
GSM3682788
PL3948
GSM3682789
PL708
GSM3682790
PS113293
GSM3682791
JN-35T
GSM3682792
JN-7T
GSM3682793
JN-10T
GSM3682794
JN-26T
GSM3682795
JN-29T
GSM3682796
PS14-1547
GSM3682797
R006
GSM3682798
R088
GSM3682799
HSJ-023
GSM3682800
C-14-00110
GSM3682801
HSJ-019
GSM3682802
HSJ-020
GSM3682803
JN-695
GSM3682804
P-14-08877
GSM3682805
P-13-06179
GSM3682806
PH1233
GSM3682807
CCHMC_4968-HGG-04A
GSM3682808
HSJ-030
GSM3682809
HSJ-031
GSM3682810
HSJ-035
GSM3682811
PS14-0531
GSM3682812
HSJ-050
GSM3682813
HSJ-051
GSM3682814
P-14-08877-R
GSM3684338
DIPGVI-P14
GSM3684339
DIPGVI-P15
GSM3684340
DIPGVI-P16
GSM3684341
DIPGXIII-KO-C10P10
GSM3684342
DIPGXIII-KO-C10P5
GSM3684343
DIPGXIII-KO-C5P8
GSM3684344
DIPGXIII-P15
GSM3684345
DIPGXIII-P17
GSM3684346
DIPGXIII-P18
GSM3684347
pcGBM2-P15
GSM3684348
G477-P14
GSM3684349
G477-LPG
GSM3701046
1840_brain_h3k27ac
GSM3701047
2089_brain_h3k27ac_sorted
GSM3701048
2168_brain_h3k27ac
GSM3701049
2192_brain_h3k27ac
GSM3701050
2230_brain_h3k27ac
GSM3701051
2469_brain_h3k27ac
GSM3701052
2480_brain_h3k27ac
GSM3701053
2658_brain_h3k27ac
GSM3701054
429_brain_h3k27ac
GSM3701055
434_brain_h3k27ac
GSM3701056
AK964_brain_h3k27ac
GSM3701057
BT245-X0-2-Rx_xenograft_h3k27ac
GSM3701058
HSJ019-Tumor-Rx_brain_h3k27ac
GSM3701059
JN14-BS1_brain_h3k27ac
GSM3701060
JN29-BS3_brain_h3k27ac
GSM3701061
JN57_brain_h3k27ac
GSM3701062
PL637_brain_h3k27ac
GSM3701063
1552-TPC-H3K27AC
GSM3701064
BT245p6_cells_h3k27ac
GSM3701065
BT869p21-Rx_cells_H3K27ac
GSM3701066
DIPGVI_c27_cells_h3k27ac
GSM3701067
DIPGXIIIp11_cells_h3k27ac
GSM3701068
G477p6_cells_h3k27ac
GSM3701069
HSJ031-C3-Rx_cells_h3k27ac
GSM3701070
HSJD-012-DIPG-TPC-H3K27AC_trim50
GSM3701071
pcGBM2p18_cells_h3k27ac
GSM3701072
ML_HGG_001_Xn_H3K27ac
GSM3701073
ML_HGG_002_Xn_H3K27ac
GSM3701074
ML_HGG_003_Xn_H3K27ac
GSM3701075
ML_HGG_004_Xn_H3K27ac
GSM3701076
ML_HGG_005_Xn_H3K27ac
GSM3701077
ML_HGG_006_Xn_H3K27ac
GSM3701078
XHSJ019-X1-1-Rx_xenograft_h3k27ac
GSM3701079
XPS124018_xenograft_h3k27ac
GSM3701080
BT245-ko-D2p8-Rx_R1_cells_h3k27ac
GSM3701081
BT245-ko-c4p6-Rx_R2_cells_h3k27ac
GSM3701082
BT245-nko-c1p5-Rx_PARENTAL_cells_h3k27ac
GSM3701083
DIPGXIII-C14-nKO-Rx_PARENTAL_cells_h3k27ac
GSM3701084
DIPGXIII-ko-c10p5-Rx_R2_cells_h3k27ac
GSM3701085
DIPGXIII-ko-c5p5-Rx_R1_cells_h3k27ac
GSM3701086
1552-TPC-input
GSM3701087
1840_brain_input
GSM3701088
2089_brain_input_sorted
GSM3701089
2168_brain_input
GSM3701090
2192_brain_input
GSM3701091
2230_brain_input
GSM3701092
2469_brain_input
GSM3701093
2480_brain_input
GSM3701094
2658_brain_input
GSM3701095
429_brain_input
GSM3701096
434_brain_input
GSM3701097
AK964_brain_input
GSM3701098
BT245-X0-2-Rx_xenograft_input
GSM3701099
BT245p6_cells_input
GSM3701100
BT869p21-Rx_cells_input
GSM3701101
DIPGVI_c27_cells_input
GSM3701102
DIPGXIIIp11_cells_input
GSM3701103
G477p6_cells_input
GSM3701104
HSJ019-Tumor-Rx_brain_input
GSM3701105
HSJ031-C3-Rx_cells_input
GSM3701106
HSJD-012-DIPG-TPC-input_trim50
GSM3701107
JN14-BS1_brain_input
GSM3701108
JN29-BS3_brain_input
GSM3701109
JN57_brain_input
GSM3701110
ML_HGG_001_Xn_input
GSM3701111
ML_HGG_002_Xn_input
GSM3701112
ML_HGG_003_Xn_input
GSM3701113
ML_HGG_004_Xn_input
GSM3701114
ML_HGG_005_Xn_input
GSM3701115
ML_HGG_006_Xn_input
GSM3701116
pcGBM2p18_cells_input
GSM3701117
PL637_brain_input
GSM3701118
XHSJ019-X1-1-Rx_xenograft_input
GSM3701119
XPS124018_xenograft_input
GSM3701120
BT245-ko-D2p8-Rx_R1_cells_input
GSM3701121
BT245-ko-c4p6-Rx_R2_cells_input
GSM3701122
BT245-nko-c1p5-Rx_PARENTAL_cells_input
GSM3701123
DIPGXIII-C14-nKO-Rx_PARENTAL_cells_input
GSM3701124
DIPGXIII-ko-c10p5-Rx_R2_cells_input
GSM3701125
DIPGXIII-ko-c5p5-Rx_R1_cells_input
GSM3701126
BT245-KO-C4P6_H3K27ac
GSM3701127
BT245-KO-C2P3_H3K27ac
GSM3701128
BT245-NKO-C1P5_H3K27ac
GSM3701129
DIPGXIII-KO-C10P5_H3K27ac
GSM3701130
DIPGXIII-KO-C5P5_H3K27ac
GSM3701131
DIPGXIII-C14_H3K27ac
GSM3701132
BTTB-434_H3K27ac
GSM3701133
1840_H3K27ac
GSM3701134
2230_H3K27ac
GSM3701135
JN-29T_H3K27ac
GSM3701136
JN-57T_H3K27ac
GSM3701137
BT245-KO-C4P6_input
GSM3701138
BT245-KO-C2P3_input
GSM3701139
BT245-NKO-C1P5_input
GSM3701140
DIPGXIII-KO-C10P5_input
GSM3701141
DIPGXIII-KO-C5P5_input
GSM3701142
DIPGXIII-C14_input
GSM3701143
BTTB-434_input
GSM3701144
1840_input
GSM3701145
2230_input
GSM3701146
JN-29T_input
GSM3701147
JN-57T_input
This SuperSeries is composed of the following SubSeries:
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More...
GSE117446
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas [RNA-Seq]
GSE128744
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas [ATAC-seq]
GSE129135
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas [ChIP-Seq]
GSE129136
Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas [ChIP-Seq 2]
Relations
BioProject
PRJNA528663
Download family
Format
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SOFT
MINiML formatted family file(s)
MINiML
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TXT
Supplementary file
Size
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File type/resource
GSE128745_RAW.tar
23.6 Mb
(http)
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TAR (of BED, NARROWPEAK)
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