|
| Status |
Public on Aug 22, 2019 |
| Title |
Expanding the regulon of the Bradyrhizobium diazoefficiens NnrR transcription factor: New insights into denitrification pathway |
| Platform organism |
Bradyrhizobium diazoefficiens USDA 110 |
| Sample organism |
Bradyrhizobium diazoefficiens |
| Experiment type |
Expression profiling by array
|
| Summary |
Genome-wide transcription profiling of B. diazoefficiens (formerly B. japonicum) wild type and nnrR mutant strain which were grown in free-living anoxic denitrifying conditions (using nitrate as final electron aceptor). This study includes also the expression data of the wild type strain grown oxically (samples GSM210269 to GSM210283 in GEO record number GSE8478). Keywords: CRP/FNR proteins, in vitro transcription, microoxia, nitrogen oxides, Rhizobia, transcriptomics
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| |
|
| Overall design |
Comparative transcriptional profiling of nnrR mutant cells with wild-type cells cultured anoxically with nitrate
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| |
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| Contributor(s) |
Jiménez-Leiva A, Cabrera JJ, Bueno E, Torres MJ, Salazar S, Bedmar EJ, Delgado MJ, Mesa S |
| Citation(s) |
31481951 |
| |
| Submission date |
May 03, 2019 |
| Last update date |
Sep 10, 2019 |
| Contact name |
Hans-Martin Fischer |
| E-mail(s) |
[email protected]
|
| Organization name |
ETH Zürich
|
| Department |
Microbiology
|
| Lab |
Prof. J. Vorholt
|
| Street address |
Vladimir-Prelog-Weg 4
|
| City |
Zürich |
| ZIP/Postal code |
CH-8093 |
| Country |
Switzerland |
| |
|
| Platforms (1) |
| GPL3401 |
Affymetrix custom Bradyrhizobium japonicum strain USDA 110 19K array |
|
| Samples (6)
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|
| Relations |
| BioProject |
PRJNA540979 |
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