|
| Status |
Public on May 08, 2019 |
| Title |
Transcriptomic profiling of zebrafish livers at 5 dpf with nAtf6 overexpression or in response to ethanol exposures |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
24874946, 34863900 |
| |
| Submission date |
May 07, 2019 |
| Last update date |
Feb 29, 2024 |
| Contact name |
Kirsten Sadler Edepli |
| E-mail(s) |
[email protected]
|
| Phone |
971568327587
|
| Organization name |
New York University Abu Dhabi
|
| Department |
Biology
|
| Street address |
PO Box 129188
|
| City |
Abu Dhabi |
| State/province |
Abu Dhabi |
| ZIP/Postal code |
000 |
| Country |
United Arab Emirates |
| |
|
| Platforms (3) |
| GPL15583 |
Illumina Genome Analyzer IIx (Danio rerio) |
| GPL18413 |
Illumina HiSeq 2500 (Danio rerio) |
| GPL25922 |
NextSeq 550 (Danio rerio) |
|
| Samples (15)
|
| GSM1362714 |
nls-Cherry Ethanol #1 |
| GSM1362715 |
nls-Cherry Ethanol #2 |
| GSM3754093 |
sibslivr1: 5 dpf Livers non transgenic siblings-1 |
| GSM3754094 |
sibslivr2: 5 dpf Livers non transgenic siblings-2 |
| GSM3754095 |
sibslivr3: 5 dpf Livers non transgenic siblings-3 |
| GSM3754096 |
nATF61: 5 dpf Livers of ATF6 transgenic zebrafish-1 |
| GSM3754097 |
nATF62: 5 dpf Livers of ATF6 transgenic zebrafish-2 |
| GSM3754098 |
nATF63: 5 dpf Livers of ATF6 transgenic zebrafish-3 |
| GSM5145706 |
78 hpf liver from sibling of transgenics overexpressing nAtf6 - Clutch 1 |
| GSM5145707 |
78 hpf liver from sibling of transgenics overexpressing nAtf6 - Clutch 2 |
| GSM5145708 |
78 hpf liver from transgenics overexpressing nAtf6 - Clutch 1 |
| GSM5145709 |
78 hpf liver from transgenics overexpressing nAtf6 - Clutch 2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE56498 |
Activating transcription factor 6 is necessary and sufficient for alcoholic fatty liver disease in zebrafish |
| GSE130800 |
Transcriptomic profiling of zebrafish livers with nAtf6 overexpression at collected at 78 and 120 hpf |
|
| Relations |
| BioProject |
PRJNA541472 |
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