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GEO accession:
Series GSE132010
Query DataSets for GSE132010
Status
Public on Dec 03, 2019
Title
Suppression of ribosomal pausing by eIF5A is necessary to maintain the fidelity of start codon selection
Organism
Homo sapiens
Experiment type
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
31801078
Submission date
May 31, 2019
Last update date
Dec 31, 2019
Contact name
Joshua Mendell
E-mail(s)
[email protected]
Organization name
UT Southwestern Medical Center
Department
Molecular Biology
Street address
6000 Harry Hines Blvd., NA6.200A
City
Dallas
State/province
TX
ZIP/Postal code
75390-9148
Country
USA
Platforms (1)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (28)
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GSM3834396
Ribo.prof._EIF5A_g1
GSM3834397
Ribo.prof._EIF5A_g2
GSM3834398
Ribo.prof._DOHH_g1
GSM3834399
Ribo.prof._DOHH_g2
GSM3834400
Ribo.prof._NT_g1
GSM3834401
Ribo.prof._NT_g2
GSM3834402
RNA-seq_EIF5A_g1
GSM3834403
RNA-seq_EIF5A_g2
GSM3834404
RNA-seq_DOHH_g1
GSM3834405
RNA-seq_DOHH_g2
GSM3834406
RNA-seq_NT_g1
GSM3834407
RNA-seq_NT_g2
GSM3834408
HCT116_EGFP_Lib A_Unsorted_Replicate 1 (HM9)
GSM3834409
HCT116_EGFP_Lib B_Unsorted_Replicate 1 (HM10)
GSM3834410
HCT116_EGFP_Lib A_Bright_Replicate 1 (HM1)
GSM3834411
HCT116_EGFP_Lib B_Bright_Replicate 1 (HM3)
GSM3834412
HCT116_5p-UTR_Lib A_Unsorted_Replicate 1 (HM31)
GSM3834413
HCT116_5p-UTR_Lib B_Unsorted_Replicate 1 (HM32)
GSM3834414
HCT116_5p-UTR_Lib A_Bright_Replicate 1 (HM23)
GSM3834415
HCT116_5p-UTR_Lib B_Bright_Replicate 1 (HM25)
GSM3834416
HCT116_EGFP_Lib A_Unsorted_Replicate 2 (HM11)
GSM3834417
HCT116_EGFP_Lib B_Unsorted_Replicate 2 (HM12)
GSM3834418
HCT116_EGFP_Lib A_Bright_Replicate 2 (HM5)
GSM3834419
HCT116_EGFP_Lib B_Bright_Replicate 2 (HM7)
GSM3834420
HCT116_5p-UTR_Lib A_Unsorted_Replicate 2 (HM33)
GSM3834421
HCT116_5p-UTR_Lib B_Unsorted_Replicate 2 (HM34)
GSM3834422
HCT116_5p-UTR_Lib A_Bright_Replicate 2 (HM27)
GSM3834423
HCT116_5p-UTR_Lib B_Bright_Replicate 2 (HM29)
This SuperSeries is composed of the following SubSeries:
GSE132007
Suppression of ribosomal pausing by eIF5A is necessary to maintain the fidelity of start codon selection (Ribosome profiling)
GSE132008
Suppression of ribosomal pausing by eIF5A is necessary to maintain the fidelity of start codon selection (RNA-sequencing)
GSE132009
Suppression of ribosomal pausing by eIF5A is necessary to maintain the fidelity of start codon selection (CRISPR screen)
Relations
BioProject
PRJNA545619
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Supplementary data files not provided
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