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Series GSE139199 Query DataSets for GSE139199
Status Public on Mar 24, 2021
Title Shape of promoter antisense RNAs regulates ligand-induced transcription activation
Organisms Homo sapiens; synthetic construct
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Other
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 34194047
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 DK018477 Enhancer Connectomes in Regulation of Gene Expression THE REGENTS OF THE UNIV. OF CALIF., UNIV. OF CALIF., SAN DIEGO MICHAEL G ROSENFELD
Submission date Oct 21, 2019
Last update date Oct 31, 2021
Contact name MICHAEL G ROSENFELD
E-mail(s) [email protected]
Organization name HHMI/UCSD
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093
Country USA
 
Platforms (2)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL17769 Illumina MiSeq (synthetic construct)
Samples (101)
GSM4131780 ChIRC on 7SK and with no estradiol treatment of MCF-7 cells Fan154
GSM4131781 ChIRC on 7SK and with estradiol treatment of MCF-7 cells (40min)
GSM4131782 ChIRC on 7SK and with no estradiol treatment of MCF-7 cells FanC213
This SuperSeries is composed of the following SubSeries:
GSE139137 ChIRC-seq Reveals Promoter Antisense RNAs and HP1α as Key Regulators of Promoter Pause Release and of Enhancer : Architectural RNA Interactions [ChIRC-seq]
GSE139138 ChIRC-seq Reveals Promoter Antisense RNAs and HP1α as Key Regulators of Promoter Pause Release and of Enhancer : Architectural RNA Interactions [PRO-seq]
GSE139196 ChIRC-seq Reveals Promoter Antisense RNAs and HP1α as Key Regulators of Promoter Pause Release and of Enhancer : Architectural RNA Interactions [ChIP-Seq]
Relations
BioProject PRJNA578724

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE139199_RAW.tar 21.8 Gb (http)(custom) TAR (of BEDGRAPH, TXT)
SRA Run SelectorHelp

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