|
| Status |
Public on Mar 23, 2020 |
| Title |
Comparative transcriptomic analysis of global gene expression mediated by (p)ppGpp reveals common regulatory networks in Pseudomonas syringae |
| Organism |
Pseudomonas syringae |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
This RNA-seq analysis examined the global effect of (p)ppGpp in P. syringae under the T3SS-inducing condition. The (p)ppGpp mutant showed differential expression of more than 30% genes in the genome, which include significant down-regulation of T3SS genes and those required for cell growth and viability.
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| |
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| Overall design |
Differential gene expression of the (p)ppGpp mutants versus wild type grown in the T3SS-inducing condition for 3 hours
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| |
|
| Contributor(s) |
Liu J, Yu M, Zhao Y |
| Citation(s) |
32272893 |
| |
| Submission date |
Jan 08, 2020 |
| Last update date |
Apr 27, 2020 |
| Contact name |
Frank Zhao |
| E-mail(s) |
[email protected]
|
| Phone |
2172659822
|
| Organization name |
University of Illinois
|
| Department |
Crop Sciences
|
| Street address |
1201 W. Gregory Dr.
|
| City |
Urbana |
| State/province |
IL |
| ZIP/Postal code |
61801 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL27977 |
Illumina HiSeq 2500 (Pseudomonas syringae) |
|
| Samples (12)
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|
| Relations |
| BioProject |
PRJNA600017 |
| SRA |
SRP240645 |
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