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Series GSE14388 Query DataSets for GSE14388
Status Public on Jan 14, 2009
Title Cotton Fiber Cells: Germplasm Line MD 52ne vs. Germplasm Line MD 90ne
Platform organisms Gossypium hirsutum; Gossypium arboreum; Gossypium raimondii
Sample organism Gossypium hirsutum
Experiment type Expression profiling by array
Summary Transcriptional profiling of cotton fiber cells from two cotton germplasm lines, MD 52ne and MD 90ne. Comparison of fiber cell transcription profiles is between the two germplasm lines and over a developmental time-course from 8 to 24 days post anthesis in four day intervals.
 
Overall design Cotton plants grown in 3-4 row plots of approximately 300-400 individual plants. Bulked fiber samples from multiple plants per each plot represented a biological replication. There were 3-4 spatially distinct plots per cotton germplasm line. Loop microarray hybridization experimental design. Biological replicates: 2 for each germplasm line at each time-point. Technical replicates: 2 for each germplasm line at each time-point (dye-swap).
 
Contributor(s) Hinchliffe DJ, Yeater KM, Kim HJ, Woodward AW, Chen ZJ, Meredith WR, Triplett BA
Citation(s) 20087569
Submission date Jan 12, 2009
Last update date Feb 18, 2015
Contact name Doug Hinchliffe
E-mail(s) [email protected]
Phone 504-286-4219
Organization name USDA-ARS
Department Southern Regional Research Center
Lab Cotton Chemistry and Utilization
Street address 1100 Robert E Lee Blvd
City New Orleans
State/province LA
ZIP/Postal code 70124
Country USA
 
Platforms (1)
GPL8062 Cotton Array Version 2
Samples (80)
GSM359672 MD 52ne 8 DPA Biological Replicate 1, Technical Replicate 1 (_1_1)
GSM359673 MD 90ne 8 DPA Biological Replicate 1, Technical Replicate 1 (_1_2)
GSM359674 MD 90ne 8 DPA Biological Replicate 1, Technical Replicate 2 (_2_1)
Relations
BioProject PRJNA111361

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE14388_RAW.tar 187.6 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table
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