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| Status |
Public on Jun 01, 2020 |
| Title |
Simultaneus presence of bacteriochlorophyll and xanthorhodopsin genes in freshwater bacterium Sphingomonas sp. AAP5 |
| Organism |
Sphingomonas sp. AAP5 |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
33361324 |
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| Submission date |
Mar 17, 2020 |
| Last update date |
Jan 04, 2021 |
| Contact name |
Karel Vaclav Kopejtka |
| E-mail(s) |
[email protected]
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| Phone |
+420777623254
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| Organization name |
Institute of Microbiology Czech Acad. Sci.
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| Department |
Centre Algatech
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| Lab |
Laboratory of Anoxygenic Phototrophs
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| Street address |
Novohradska
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| City |
Trebon |
| ZIP/Postal code |
37981 |
| Country |
Czech Republic |
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| Platforms (1) |
| GPL28277 |
Illumina HiSeq 2500 (Sphingomonas sp. AAP5) |
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| Samples (21)
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| GSM4413684 |
AAP5, early plate, day 4, Replicate 1 |
| GSM4413685 |
AAP5, early plate, day 4, Replicate 2 |
| GSM4413686 |
AAP5, early plate, day 4, Replicate 3 |
| GSM4413687 |
AAP5, late plate, day 8, Replicate 1 |
| GSM4413688 |
AAP5, late plate, day 8, Replicate 2 |
| GSM4413689 |
AAP5, late plate, day 8, Replicate 3 |
| GSM4413698 |
AAP5, low carbon, dark, Replicate 1 |
| GSM4413699 |
AAP5, low carbon, dark, Replicate 2 |
| GSM4413700 |
AAP5, low carbon, dark, Replicate 3 |
| GSM4413701 |
AAP5, high carbon, dark, Replicate 1 |
| GSM4413702 |
AAP5, high carbon, dark, Replicate 2 |
| GSM4413703 |
AAP5, high carbon, dark, Replicate 3 |
| GSM4413704 |
AAP5, low carbon, light, Replicate 1 |
| GSM4413705 |
AAP5, low carbon, light, Replicate 2 |
| GSM4413706 |
AAP5, low carbon, light, Replicate 3 |
| GSM4413707 |
AAP5, high carbon, light, Replicate 1 |
| GSM4413708 |
AAP5, high carbon, light, Replicate 2 |
| GSM4413709 |
AAP5, high carbon, light, Replicate 3 |
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| This SuperSeries is composed of the following SubSeries: |
| GSE147049 |
Transcription of photosynthetic genes in AAP5 during growth on solid and liquid media |
| GSE147051 |
Transcriptome response to carbon-limiting conditions. |
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| Relations |
| BioProject |
PRJNA613036 |
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