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| Status |
Public on Dec 29, 2020 |
| Title |
RNA sequencing of HAP1 WT and MED13 KO clones |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Purpose: The aim of the experiment was to eludicate differentialy expressed genes (DEGs) upon treatment with alkylating agent MMS between WT and MED13 deficient HAP1 cells.
Results: After bioinformatic processing, at ≥2-fold change and an FDR≤0.1, 446 DEGs were identified in MED13 KO cells when compared to WT. Upon the MMS treatment 394 DEGs were identified in MED13 KO cells, of which 229 were common with untreated MED13 KO cells.
Conclusions: Common DEGs represented genes directly regulated by MED13.
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| Overall design |
Each genotype were analysed in 3 biological replicates for both MMS treated and untreated conditions. Control sample were represented by HAP1 WT untreated replicates.
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| Contributor(s) |
Rolinski M, Fordyce Martin SL, Montaldo NP, van Loon B |
| Citation(s) |
33444446 |
| |
| Submission date |
Mar 23, 2020 |
| Last update date |
Mar 02, 2021 |
| Contact name |
Barbara van Loon |
| E-mail(s) |
[email protected]
|
| Organization name |
Norwegian University of Science and Technology
|
| Department |
Department of Clinical and Molecular Medicine (IKOM)
|
| Street address |
Erling Skjalgssons gt 1
|
| City |
Trondheim |
| ZIP/Postal code |
7491 |
| Country |
Norway |
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| Platforms (1) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA614013 |
| SRA |
SRP253676 |
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