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Series GSE149716 Query DataSets for GSE149716
Status Public on Dec 01, 2020
Title Loss of cyclin A2 in murine colonic epithelial cells disrupts colon homeostasis by triggering DNA damage and dysplasia and high cyclin A2 expression is a good-prognosis factor in patients with colorectal cancer
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To clarify the function of cyclin A2 in colon homeostasis and colorectal cancer (CRC) we generated mice deficient for cyclin A2 in colonic epithelial cells (CEC). Colons of those mice displayed architectural changes in the mucosa, and signs of inflammation as well as an increased proliferation of CEC associated with the appearance of low- and high-grade dysplasia. The main initial events triggering those alterations in cyclin A2 deficient CEC appear to be abnormal mitoses and DNA damage. Cyclin A2 deletion in CEC promoted the development of dysplasia and adenocarcinomas in the murine colitis-associated cancer model.
 
Overall design CEC were isolated from the proximal colon part from 4 weeks-old Ccna2 fl/fl vil-Cre (KO) and Ccna2 fl/fl (control) mice. RNA sequencing was performed on an Illumina NextSeq 500.
 
Contributor(s) Lemmers B, Mamessier E, Da Costa Q
Citation(s) 33332285
Submission date May 01, 2020
Last update date Feb 22, 2021
Contact name Quentin Da Costa
Organization name Institut Paoli-Calmettes
Street address 232 boulevard de Sainte Marguerite
City Marseille
ZIP/Postal code 13009
Country France
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM4509302 Colonic Epithelial Cells, WT rep1
GSM4509303 Colonic Epithelial Cells, WT rep2
GSM4509304 Colonic Epithelial Cells, Ccna2-KO rep1
Relations
BioProject PRJNA629794
SRA SRP259931

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE149716_raw_transcript_counts.txt.gz 2.5 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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