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Series GSE153376 Query DataSets for GSE153376
Status Public on Aug 27, 2021
Title PD-1+ Tcf1+ CD8+ T cells from established chronic infections can convert into memory cells but keep a stable imprint of persistent stimulation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The CD8+ T cell response to chronic viral infection is sustained by virus-specific memory-like (TML) CD8+ T cells. TML have recall expansion, self-renewal and differentiation capacity, similar to central memory (TCM) CD8+ T cells that arise in response to acute infection and persist long-term in the absence of antigen. An unresolved question is whether TML can also form memory. Here we showed that TML persisted in antigen free hosts. Further, in response to acute restimulation, TML expanded and differentiated inefficiently, but self-renewal and long-term persistence was not very different from TCM. Progeny of TML resembled conventional memory cells but retained multiple characteristics of chronically stimulated cells. This imprint was accounted for by the overexpression of the transcription factor Tox. Our findings demonstrated that chronically stimulated CD8+ T cells yielded memory that, however, differed from conventional memory formed in response to acute resolved infection.
 
Overall design B6 mice (CD45.1/.2) and TCR Vb5 transgenic mice (CD45.1) were transferred with Tcf7GFP P14 cells from naive mice (CD45.2) and infected with LCMV Armstrong (Arm) and LCMV clone 13 (cl13), respectively. Total P14 cells were flow sorted at d32 post infection. Alternatively, Tcf7GFP+ P14 cells were flow sorted at d45 post Arm and cl13 infection and transferred into secondary B6 mice (CD45.1/.2) that were infected with LCMV Arm. Total P14 cells were flow sorted at d42 post infection (Tcm>Arm) and (Tml>Arm). Each sample derived from a pool of at least 3 mice.
 
Contributor(s) Charmoy M, Wyss T, Delorenzi M, Held W
Citation(s) 34496259
Submission date Jun 26, 2020
Last update date Nov 26, 2021
Contact name Tania Wyss
Organization name SIB Swiss Institute of Bioinformatics
Street address Rue du Bugnon 25A
City Lausanne
ZIP/Postal code 1015
Country Switzerland
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (5)
GSM4643200 Arm
GSM4643201 c13
GSM4643202 Tcm>Arm
Relations
BioProject PRJNA642164
SRA SRP268936

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153376_WH_Arm_cl13_LCMV_prim_sec_mm10_scRNAseq_counts.txt.gz 49.3 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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