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Series GSE153401 Query DataSets for GSE153401
Status Public on Jan 10, 2021
Title PTBP1 is necessary for dendritic cells to regulate T cells homeostasis and antitumor immunity
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Dendritic cells (DCs) play an important role in innate and adaptive immunity. DCs could sense environment pathogens and tumors, presenting those antigens to T cells. PTBP1, an RNA-binding protein, the function in DCs is unknown. Here, we found PTBP1 specific deficiency in DCs could impair T cell homeostasis. PTBP1 deletion in DCs could enhance antitumor immunity and increase asthma exacerbation. Further studies demonstrate that PTBP1 negatively regulates the induction of a subset of IFN-response genes. These findings revealed the novel functions of PTBP1 in DCs and might be a potential therapeutic target for tumors.
 
Overall design Here, we performed RNA-seq of Dendritic cells(DCs) from Ptbp1 deficient mouses and WT to further study the molecular changed between KO and WT.
 
Contributor(s) Xu C, Geng G, Zhu Y, Shi L
Citation(s) 33421118
Submission date Jun 27, 2020
Last update date Jan 10, 2021
Contact name Changlu Xu
E-mail(s) [email protected]
Organization name Chinese Academy of Medical Sciences & Peking Union Medical College
Department State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Diseases, Institute of Hematology & Blood Diseases Hospital
Street address 288 Nanjing Rd, Heping
City TianJin
State/province TianJin
ZIP/Postal code 300020
Country China
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (10)
GSM4643794 Ptbp1 deficiency Dendritic cells 1
GSM4643795 Ptbp1 deficiency Dendritic cells 2
GSM4643796 Ptbp1 deficiency Dendritic cells 3
Relations
BioProject PRJNA642299
SRA SRP269015

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE153401_Ptbp1_DCs_filtered_gene.fpkm.txt.gz 647.0 Kb (ftp)(http) TXT
GSE153401_Ptbp1_DCs_gene.count.txt.gz 404.9 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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