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| Status |
Public on Jul 22, 2023 |
| Title |
Large scale transcriptome analysis was used to identify the genes most related to the transcription of cellulase genes and/or xylanase genes expression |
| Organism |
Penicillium oxalicum |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Based on the transcriptome data of deletion mutants of different genes and different culture conditions of Penicillium oxalicum, the correlation of gene transcription levels in the whole genome was calculated to explore the genes most related to the transcription of cellulase gene and/or xylanase gene in Penicillium oxalicum, including transcription factors, sugar transporters and other functional genes.
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| Overall design |
Both cellulase and xylanase are enzymes synthesized in the presence of inducers. Therefore, we believe that the transcription level of genes related to the transcription of cellulase and xylanase genes will certainly change under different culture conditions and the deletion mutants of transcription factors which have an important impact on the production of cellulase and xylanase. Consequently, it is possible to find the most relevant genes for cellulase and xylanase gene expression through correlation analysis of gene transcription levels on important transcription factor deletion mutants and a large amount of transcriptome data under different culture conditions.
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| Contributor(s) |
Zhao S, Chengxi L |
| Citation missing |
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| Submission date |
Aug 06, 2020 |
| Last update date |
Jul 22, 2023 |
| Contact name |
Li ChengXi |
| E-mail(s) |
[email protected]
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| Organization name |
Bengbu Medical College
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| Department |
Affiliated Sixth People’s Hospital
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| Street address |
2600 Donghai Avenue, Bengbu, Anhui, China
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| City |
bengbu |
| State/province |
Anhui |
| ZIP/Postal code |
233000 |
| Country |
China |
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| Platforms (3) |
| GPL20250 |
Illumina HiSeq 2000 (Penicillium oxalicum) |
| GPL24231 |
BGISEQ-500 (Penicillium oxalicum) |
| GPL26664 |
Illumina HiSeq 4000 (Penicillium oxalicum) |
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| Samples (114)
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| Relations |
| BioProject |
PRJNA655638 |
| SRA |
SRP276379 |
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