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GEO accession:
Series GSE156021
Query DataSets for GSE156021
Status
Public on Jun 07, 2021
Title
GATA6 defines endoderm fate by controlling chromatin accessibility during differentiation of human induced pluripotent stem cells.
Organism
Homo sapiens
Experiment type
Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34010638
NIH grant(s)
Grant ID
Grant title
Affiliation
Name
P20 GM130457
COBRE in Digestive & Liver Disease
MEDICAL UNIVERSITY OF SOUTH CAROLINA
STEPHEN A DUNCAN
R01 DK102716
Molecular Basis of Human Hepatic Progenitor Cell Formation
MEDICAL UNIVERSITY OF SOUTH CAROLINA
STEPHEN A DUNCAN
R01 DK119728
Study and Treatment of Mitochondrial DNA Depletion Syndrome 3 Using iPSCs
MEDICAL UNIVERSITY OF SOUTH CAROLINA
STEPHEN A DUNCAN
Submission date
Aug 11, 2020
Last update date
Jun 07, 2021
Contact name
Stephen A Duncan
E-mail(s)
[email protected]
Phone
843-792-9104
Organization name
Medical University South Carolina
Department
Regenerative Medicine and Cell Biology
Lab
Duncan Lab
Street address
173 Ashley Avenue, BSB 6th Floor, Room 657A
City
Charleston
State/province
SC
ZIP/Postal code
29425
Country
USA
Platforms (2)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
GPL23227
BGISEQ-500 (Homo sapiens)
Samples (63)
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GSM4720508
ATAC - Day 0 - GATA6+/+
GSM4720509
ATAC - Day 2 - GATA6+/+
GSM4720510
ATAC - Day 2 - GATA6Ex4∆1/∆2;ind GATA6 (-dox)
GSM4720511
ATAC - Day 2 - GATA6Ex4∆1/∆2;ind GATA6 (+dox)
GSM4720512
ATAC - Day 4A - GATA6+/+
GSM4720513
ATAC - Day 4 - GATA6Ex4∆1/∆2;ind GATA6 (-dox)
GSM4720514
ATAC - Day 4 - GATA6Ex4∆1/∆2;ind GATA6 (+dox)
GSM4720515
ATAC - Day 6 - GATA6+/+
GSM4720516
ATAC - Day 8 - GATA6+/+
GSM4720517
ATAC - Day 4B - GATA6+/+
GSM4720518
ATAC - Day 4 - GATA6Ex4∆1/∆2;ind FOXA2 (-dox)
GSM4720519
ATAC - Day 4 - GATA6Ex4∆1/∆2;ind FOXA2 (+dox)
GSM4720520
ATAC - Day 4 - GATA6Ex4∆1/∆2;ind FOXA2 (++dox)
GSM4720521
H3K4me1 - Day 0 - GATA6 WT
GSM4720522
H3K4me1 - Day 2 - GATA6 WT
GSM4720523
H3K4me1 - Day 2 - GATA6 KO
GSM4720524
H3K4me1 - Day 2 - GATA6 RES
GSM4720525
H3K4me1 - Day 4 - GATA6 WT
GSM4720526
H3K4me1 - Day 4 - GATA6 KO
GSM4720527
H3K4me1 - Day 4 - GATA6 RES
GSM4720528
H3K9me2 - Day 0 - GATA6 WT
GSM4720529
H3K9me2 - Day 2 - GATA6 WT
GSM4720530
H3K9me2 - Day 2 - GATA6 KO
GSM4720531
H3K9me2 - Day 2 - GATA6 RES
GSM4720532
H3K9me2 - Day 4 - GATA6 WT
GSM4720533
H3K9me2 - Day 4 - GATA6 KO
GSM4720534
H3K9me2 - Day 4 - GATA6 RES
GSM4720535
H3K9me3 - Day 0 - GATA6 WT
GSM4720536
H3K9me3 - Day 2 - GATA6 WT
GSM4720537
H3K9me3 - Day 2 - GATA6 KO
GSM4720538
H3K9me3 - Day 2 - GATA6 RES
GSM4720539
H3K9me3 - Day 4 - GATA6 WT
GSM4720540
H3K9me3 - Day 4 - GATA6 KO
GSM4720541
H3K9me3 - Day 4 - GATA6 RES
GSM4720542
RNA - Day 0 - R1 - GATA6+/+
GSM4720543
RNA - Day 0 - R2 - GATA6+/+
GSM4720544
RNA - Day 2 - R1 - GATA6+/+
GSM4720545
RNA - Day 2 - R2 - GATA6+/+
GSM4720546
RNA - Day 2 - R1 - GATA6Ex4∆1/∆2;ind GATA6 (-dox)
GSM4720547
RNA - Day 2 - R2 - GATA6Ex4∆1/∆2;ind GATA6 (-dox)
GSM4720548
RNA - Day 2 - R1 - GATA6Ex4∆1/∆2;ind GATA6 (+dox)
GSM4720549
RNA - Day 2 - R2 - GATA6Ex4∆1/∆2;ind GATA6 (+dox)
GSM4720550
RNA - Day 4 - R1 - GATA6+/+
GSM4720551
RNA - Day 4 - R2 - GATA6+/+
GSM4720552
RNA - Day 4 - R1 - GATA6Ex4∆1/∆2;ind GATA6 (-dox)
GSM4720553
RNA - Day 4 - R2 - GATA6Ex4∆1/∆2;ind GATA6 (-dox)
GSM4720554
RNA - Day 4 - R1 - GATA6Ex4∆1/∆2;ind GATA6 (+dox)
GSM4720555
RNA - Day 4 - R2 - GATA6Ex4∆1/∆2;ind GATA6 (+dox)
GSM4720556
RNA - Day 6 - R1 - GATA6+/+
GSM4720557
RNA - Day 6 - R2 - GATA6+/+
GSM4720558
RNA - Day 8 - R1 - GATA6+/+
GSM4720559
RNA - Day 8 - R2 - GATA6+/+
GSM5004286
GATA6 GATA6+/+ Day 2
GSM5004287
FOXA2 GATA6+/+ Day 2
GSM5004288
EOMES GATA6+/+ Day 2
GSM5004289
EOMES GATA6-/- Day 2
GSM5004290
GATA6 GATA6+/+ Day 4
GSM5004291
FOXA2 GATA6+/+ Day 4
GSM5004292
FOXA2 GATA6-/-indFOXA2 Day 4
GSM5004293
Input GATA6+/+ Day 2
GSM5004294
Input GATA6-/- Day 2
GSM5004295
Input GATA6+/+ Day 4
GSM5004296
Input GATA6-/-indFOXA2 Day 4
This SuperSeries is composed of the following SubSeries:
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GSE156018
GATA6 defines endoderm fate by controlling chromatin accessibility during differentiation of human induced pluripotent stem cells [ATAC-seq]
GSE156019
GATA6 defines endoderm fate by controlling chromatin accessibility during differentiation of human induced pluripotent stem cells [ChIP-seq]
GSE156020
GATA6 defines endoderm fate by controlling chromatin accessibility during differentiation of human induced pluripotent stem cells [RNA-seq]
GSE164231
GATA6 defines endoderm fate by controlling chromatin accessibility during differentiation of human induced pluripotent stem cells [TF_ChIP-seq]
Relations
BioProject
PRJNA656438
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File type/resource
GSE156021_RAW.tar
13.6 Gb
(http)
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TAR (of BEDGRAPH, BW)
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