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Series GSE1561 Query DataSets for GSE1561
Status Public on Jun 01, 2005
Title EORTC 10994 clinical trial
Organism Homo sapiens
Experiment type Expression profiling by array
Summary EORTC 10994 is a phase III clinical trial comparing FEC with ET in patients with large operable, locally advanced or inflammatory breast cancer (www.eortc.be). Frozen biopsies were taken at randomisation. RNA was extracted from 100um thickness of 14G core needle biopsies. Adjacent sections were tested by H&E to confirm >20% tumour cell content. 100 ng total RNA per chip were amplified using the Affymetrix small sample protocol (IVT then Enzo). 49 tumours were tested on Affymetrix U133A chips. The CEL files were quantile normalised together using rma. Clinical response data are not available yet.
Keywords = Apocrine carcinoma
Keywords = breast cancer
 
 
Contributor(s) Iggo RD
Citation(s) 15897907
Submission date Jul 14, 2004
Last update date Aug 10, 2018
Contact name Richard Iggo
E-mail(s) [email protected]
Phone +33 5 56 33 04 23
Fax +33 5 56 33 32 06
Organization name University of Bordeaux
Department Bergonie Cancer Institute
Lab INSERM U916
Street address 229 cours de l'Argonne
City Bordeaux
ZIP/Postal code 33076
Country France
 
Platforms (1)
GPL96 [HG-U133A] Affymetrix Human Genome U133A Array
Samples (49)
GSM26804 PF01 EpPpT2N0G2
GSM26867 PF02 EpPpT4N1G2
GSM26868 PF03 EpPpT3N0Gu
Relations
BioProject PRJNA90875

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE1561_RAW.tar 172.8 Mb (http)(custom) TAR (of CEL, EXP)

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