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| Status |
Public on Sep 07, 2020 |
| Title |
Lipid stores and lipid metabolism associated gene expression in porcine and bovine parthenogenetic embryos revealed by immunostaining and RNA-seq [Ss] |
| Organism |
Sus scrofa |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Compared to other mammalian species, porcine oocytes and embryos are characterized by large amounts of lipids stored mainly in the form of droplets in the cytoplasm. The amount and the morphology of LD change throughout the preimplantation development however, relatively little is known about expression of genes involved in lipid metabolism of early embryos. We compared porcine and bovine blastocyst stage embryos as well as dissected inner cell mass (ICM) and trophoblast (TE) cell populations with regard to lipid droplet storage and expression of genes functionally annotated to selected lipid Gene Ontology terms using RNA-seq. Comparing the number and the volume occupied by LD between bovine and porcine blastocysts, we have found significant differences both at the level of single embryo and a single blastomere. Aside from different lipid content we found that embryos regulate the lipid metabolism differentially at the gene expression level. Out of 125 genes, we have found 73 to be differentially expressed between entire porcine and bovine blastocyst, and 36 and 51 to be divergent between ICM and TE cell lines. We noticed significant involvement of cholesterol and ganglioside metabolism in preimplantation embryos as well as possible shift towards glucose rather than pyruvate dependence in bovine embryos. A number of genes like DGAT1, CD36 or NR1H3 may serve as lipid associated markers indicating distinct regulatory mechanisms while upregulated PLIN2, APOA1, SOAT1 indicate significant function during blastocyst formation and cell differentiation in both models.
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| |
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| Overall design |
4 blastocyst samples, 3 inner cell mass (ICM) samples, 3 trophectoderm (TE) samples
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| Contributor(s) |
Kajdasz AP, Warzych E, Derebecka N, Madeja ZE, Lechniak D, Wesoły J, Pawlak P |
| Citation(s) |
32899450 |
| |
| Submission date |
Aug 12, 2020 |
| Last update date |
Sep 09, 2020 |
| Contact name |
Arkadiusz Kajdasz |
| E-mail(s) |
[email protected]
|
| Organization name |
Institute of Bioorganic Chemistry PAS
|
| Lab |
Laboratory of Bioinformatics
|
| Street address |
ul. Z. Noskowskiego 12/14
|
| City |
Poznań |
| State/province |
wielkopolskie |
| ZIP/Postal code |
61-704 |
| Country |
Poland |
| |
|
| Platforms (1) |
| GPL26351 |
Illumina NovaSeq 6000 (Sus scrofa) |
|
| Samples (28)
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| This SubSeries is part of SuperSeries: |
| GSE156149 |
Lipid stores and lipid metabolism associated gene expression in porcine and bovine parthenogenetic embryos revealed by immunostaining and RNA-seq |
|
| Relations |
| BioProject |
PRJNA656843 |
| SRA |
SRP277256 |
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