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Series GSE157738 Query DataSets for GSE157738
Status Public on Sep 10, 2020
Title Monocyte-derived DC Expression Data from Advanced Staged Melanoma Patients
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The metastatic form of Melanoma has a reported ten-year survival rate of approximately 15%. Clinical trials have shown modest success in a subset of patients. Particularly, combinational therapy using checkpoint blockade has shown the most success, but many patients do not respond. The patients that do respond to treatments often have a pre-existing antitumor immunity.
To generate an optimal anti-tumor immune response, we have previously created a dendritic cell (DC) based adenovirus vaccine targeted against three common melanoma associated antigens: Tyrosinase, MART-1, and MAGE-A6 (TMM2). The vaccine was used in a Phase 1 clinical trial (NCT01622933) , where 35 patients were enrolled. Immature DC (iDC) were generated from patient monocytes (GM-CSF + IL-4), matured (mDC) using IFNG + LPS, and transduced with the adenovirus vaccine (AdVTMM2 DC). Patients received three intradermal injections of the vaccine over the course of one month. Human genome RNA microarray was used to analyze the gene expression profiles of the DC vaccine for each patient.
 
Overall design 34/35 patient DCs were analyzed for each DC subtype (iDC, mDC, AdVTMM2 DC) using the Affymetrix Human Gene 2.0 ST Array. We investigated gene expression profiles that correlated with overall survival and favorable clinical outcomes in late-stage melanoma patients.

Clinical outcome definitions:
PD: Progressive Disease
SD: Stable Disease
NED1: No Evidence of Disease at time of enrollment and remained NED for ≤ 18 months
NED2: No Evidence of Disease at time of enrollment and remained NED for ≥ 18 months
PR: Partial Responder (RECIST)
 
Contributor(s) Maurer DM, Butterfield LH
Citation(s) 33051240, 37938561
Submission date Sep 09, 2020
Last update date Dec 05, 2023
Contact name Deena Marie Maurer
E-mail(s) [email protected]
Organization name University of Pittsburgh
Department Immunology
Street address 200 Lothrop Street
City Pittsburgh
ZIP/Postal code 15213
Country USA
 
Platforms (1)
GPL16686 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]
Samples (102)
GSM4774159 Day 5 Immature DC_Patient 10
GSM4774160 Day 5 Immature DC_Patient 11
GSM4774161 Day 5 Immature DC_Patient 12
Relations
BioProject PRJNA662594

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Supplementary file Size Download File type/resource
GSE157738_RAW.tar 788.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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