|
| Status |
Public on Feb 22, 2021 |
| Title |
Nutritional regulation of pathogenesis gene expression in Pseudomonas syringae |
| Organism |
Pseudomonas syringae |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Pseudomonas syringae was grown on minimal media and King's B medium.
The goal of this project was to generate pilot data in preparation for a summer course on high-throughput sequencing where participants prepared their own RNA-Seq libraries and analyzed the resulting data. The summer course was funded by NIH grant 5R25EB023928-03 "A hands-on, integrative next-generation sequencing course: design, experiment, and analysis".
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| |
|
| Overall design |
Three biological replicates were assayed for each condition
|
| |
|
| Contributor(s) |
Granek JA, Zwack PJ, Mwimba M, Motley J |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Oct 28, 2020 |
| Last update date |
Feb 25, 2021 |
| Contact name |
Joshua Aaron Granek |
| E-mail(s) |
[email protected]
|
| Organization name |
Duke University School of Medicine
|
| Department |
Department of Biostatistics and Bioinformatics
|
| Street address |
Box 3568, 213 Research Drive
|
| City |
Durham |
| State/province |
NC |
| ZIP/Postal code |
27710 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL29316 |
Illumina MiSeq (Pseudomonas syringae) |
|
| Samples (6)
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|
| Relations |
| BioProject |
PRJNA672939 |
| SRA |
SRP289480 |
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