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Series GSE161356 Query DataSets for GSE161356
Status Public on Nov 09, 2021
Title Vaccine-elicited CD4 T cells prevent the deletion of antiviral B cells in chronic infection
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary CD4 T cells responses induced by LM61 immunization are heterogeneous in phenotype. The majority consists of Th1 cells, but there is also a consistent population of Tfh-differentiated cells and a minor population of Treg cells. Tfh-differentiated cells, alongside Th1 cells expand upon LCMV challenge.
 
Overall design LCMV GP66-77-specific CD4 T cells were analyzed on day 9 after LM61 immunization. Additional mice were given KL25HL B cell transfer and LCMV challenge on day 9 after LM61 immunization and GP66-77-specific CD4 T cells were analyzed on day 14. To control for the impact of LM61 pre-immunization on the differentiation of GP66-77-specific CD4 T cell responses upon LCMV challenge, an additional group of mice was given wildtype LM on day 0 instead of LM61.
 
Contributor(s) Narr K, Schreiner D, Pinschewer DD
Citation(s) 34772811
Submission date Nov 12, 2020
Last update date Feb 08, 2022
Contact name Daniel Pinschewer
Organization name University of Basel
Department Department of Biomedicine
Lab Experimental Virology
Street address Petersplatz 10
City Basel
ZIP/Postal code 4003
Country Switzerland
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM4905251 LM wt Nr.2
GSM4905252 LM wt Nr. 3
GSM4905253 LM61 d14 Nr. 7
Relations
BioProject PRJNA677948
SRA SRP292345

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE161356_UMImatrix_Lm_GP61_d0.tsv.gz 24.2 Mb (ftp)(http) TSV
GSE161356_UMImatrix_Lm_GP61_d5.tsv.gz 30.1 Mb (ftp)(http) TSV
GSE161356_UMImatrix_Lm_WT_d5.tsv.gz 31.8 Mb (ftp)(http) TSV
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Raw data are available in SRA
Processed data are available on Series record

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