|
| Status |
Public on Jun 01, 2021 |
| Title |
WGS data to conduct phylogenetic analysis in Trichinella |
| Organisms |
Trichinella spiralis; Trichinella nativa; Trichinella nelsoni; Trichinella pseudospiralis; Trichinella britovi; Trichinella sp. T6; Trichinella sp. T8; Trichinella murrelli; Trichinella sp. T9; Trichinella papuae; Trichinella zimbabwensis; Trichinella patagoniensis |
| Experiment type |
Other
|
| Summary |
To reveal the correlation between epigenomic diversity and genomic SNVs, we first identified SNPs between T4 with other eleven Trichinella species. In total, we obtained 5,395,250 common SNVs across the twelve Trichinella species.
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| |
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| Overall design |
Examination of SNVs in Trichinella.
|
| |
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| Contributor(s) |
Gao F, Feng Y |
| Citation(s) |
34179010 |
| |
| Submission date |
Mar 23, 2021 |
| Last update date |
Jul 02, 2021 |
| Contact name |
Yayan Feng |
| E-mail(s) |
[email protected]
|
| Phone |
13161164012
|
| Organization name |
Chinese Academy of Agricultural Sciences
|
| Lab |
Genome Analysis Laboratory of the Ministry of Agriculture
|
| Street address |
No. 7 pengfei road, dapeng new district, shenzhen
|
| City |
Shenzhen,Guangdong Province,China |
| State/province |
--- Select a state --- |
| ZIP/Postal code |
518000 |
| Country |
China |
| |
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| Platforms (12)
|
| GPL15773 |
Illumina HiSeq 2000 (Trichinella spiralis) |
| GPL29899 |
Illumina HiSeq 2000 (Trichinella nativa) |
| GPL29900 |
Illumina HiSeq 2000 (Trichinella britovi) |
| GPL29901 |
Illumina HiSeq 2000 (Trichinella pseudospiralis) |
| GPL29902 |
Illumina HiSeq 2000 (Trichinella murrelli) |
| GPL29903 |
Illumina HiSeq 2000 (Trichinella sp. T6) |
| GPL29904 |
Illumina HiSeq 2000 (Trichinella nelsoni) |
| GPL29905 |
Illumina HiSeq 2000 (Trichinella sp. T8) |
| GPL29906 |
Illumina HiSeq 2000 (Trichinella sp. T9) |
| GPL29907 |
Illumina HiSeq 2000 (Trichinella papuae) |
| GPL29908 |
Illumina HiSeq 2000 (Trichinella zimbabwensis) |
| GPL29909 |
Illumina HiSeq 2000 (Trichinella patagoniensis) |
|
| Samples (12)
|
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| This SubSeries is part of SuperSeries: |
|
| Relations |
| BioProject |
PRJNA716532 |
| SRA |
SRP311777 |
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