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Series GSE171274 Query DataSets for GSE171274
Status Public on Dec 08, 2021
Title Conditional deletion of Pdcd1 identifies the cell-intrinsic action of PD-1 on functional CD8 T cell subsets for anti-tumor efficacy
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary PD-1 blockade has a profound effect on the ability of the immune system to eliminate tumors but many questions remain about the cell types involved and the underlying mechanisms of immune activation. To shed some light on this, the cellular and molecular events following inhibition of PD-1 signaling was investigated in the MC-38 colon carcinoma model using constitutive (PD-1 KO) and conditional (PD1cKO) PD-1 KO mice as well as in wild type mice treated with an anti-PD-1 antibody. The impact on both tumor growth and the development of tumor immunity was assessed. In the PD-1cKO mice, a complete deletion of Pdcd1 in tumor infiltrating T cells (TILs) after tamoxifen treatment led to the inhibition of tumor growth of both small and large tumors. Extensive immune phenotypic analysis of the TILs by flow and mass cytometry identified 22-different T cell subsets of which specifically 5-CD8 positive ones expanded in all three models after PD-1 blockade. All 5 subsets expressed granzyme B and secreted IFNγ. Gene expression analysis of the tumor further supported the phenotypic analysis in both PD-1cKO and PD-1 Ab treated mice and showed an upregulation of pathways related to CD4 and CD8 T cell activation and enhanced signaling through co-stimulatory molecules and IFNγ. Altogether, using PD-1 cKO we define the intrinsic nature of PD-1 suppression of CD8 T cell responses in tumor immunity.
 
Overall design Total RNA from tumors from either wild-type MC38 mice treated with anti-PD1 antibody muDX400, or conditional Pdcd1 (PD1) KO mice, was sequenced.
Web link https://doi.org/10.3389/fimmu.2021.752348
 
Contributor(s) Muise ES, Raghavan S, Sathe M, Blumenschein W, Pinheiro EM, de Waal Malefyt R
Citation(s) 34912335
Submission date Mar 31, 2021
Last update date Jan 07, 2022
Contact name Eric Muise
E-mail(s) [email protected]
Phone 6179923514
Organization name Merck
Department GPGX
Street address 33 Ave. Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (46)
GSM5221633 MC38_CellLine_1
GSM5221635 MC38_CellLine_2
GSM5221637 MC38_CellLine_3
Relations
BioProject PRJNA718882
SRA SRP312955

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Supplementary file Size Download File type/resource
GSE171274_cKO_fpkm.txt.gz 3.2 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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