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Series GSE172093 Query DataSets for GSE172093
Status Public on Jul 16, 2021
Title A mechanism of coupling leading and lagging strand DNA synthesis under replication stress in budding yeast
Organism Saccharomyces cerevisiae
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Other
Summary Here we show that the asymmetric DNA synthesis is also observed in mec1-100 and mrc1-AQ cells defective in replication checkpoint, but surprisingly, not in mrc1∆ cells in which both DNA replication and checkpoint functions of Mrc1 are missing. Furthermore, depletion of Mrc1 or its partner in DNA replication, Tof1, suppresses the asymmetric DNA synthesis in rad53-1 mutant cells.
 
Overall design ChIP-Seq was performed for Rfa1; BrdU was performed for yeast cells under different conditions.
 
Contributor(s) Serra-Cardona A, Yu C, Zhang X, Hua X, Gan H, Zhang Z
Citation(s) 34531325
Submission date Apr 14, 2021
Last update date Jan 26, 2022
Contact name Xu Hua
E-mail(s) [email protected]
Organization name Columbia University
Department Institute for Cancer Genetics
Lab Zhiguo Zhang
Street address 1130 St Nicholas Ave
City New York
State/province New York
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL13821 Illumina HiSeq 2000 (Saccharomyces cerevisiae)
Samples (36)
GSM5241657 mec1-100 Rfa1 chip rep1
GSM5241658 mec1-100 Rfa1 chip rep2
GSM5241659 mec1-100 sml1D Rfa1 ChIP rep1
Relations
BioProject PRJNA721981
SRA SRP314853

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172093_RAW.tar 482.5 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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