NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE174478 Query DataSets for GSE174478
Status Public on Apr 05, 2022
Title Whole transcriptome profiling of Japanese nonalcoholic fatty liver disease cohort.
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Nonalcoholic steatohepatitis (NASH) is a severe form of nonalcoholic fatty liver disease (NAFLD) that is characterized by hepatic steatosis, inflammation, hepatocellular injury, and fibrosis, which lead to progressed cirrhosis and hepatocellular carcinoma. Despite its increasing prevalence on a global scale, the pathogenesis of NASH progression is not well understood. To elucidate the underlying mechanisms of NASH progression, we conducted transcriptome analyses of Japanese NAFLD cohort in our facility.
 
Overall design 94 biopsy proven NAFLD patients were studied. The liver biopsy samples underwent high-throughput RNA sequencing and we compared relative gene expression levels across these samples.
 
Contributor(s) Matsushita Y, Kawamura S, Fujiwara N, Nakagawa H
Citation(s) 35380992
Submission date May 14, 2021
Last update date Apr 04, 2024
Contact name Hayato Nakagawa
E-mail(s) [email protected]
Organization name The University of Tokyo
Street address 7-3-1 Hongo Bunkyo-ku
City Tokyo
ZIP/Postal code 113-8655
Country Japan
 
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (94)
GSM5315283 Liver transcriptome of Patient_101
GSM5315284 Liver transcriptome of Patient_102
GSM5315285 Liver transcriptome of Patient_103
Relations
BioProject PRJNA730024
SRA SRP319881

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE174478_raw_gene_counts_matrix.txt.gz 4.0 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap