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Series GSE174749 Query DataSets for GSE174749
Status Public on Jun 10, 2021
Title GeoMx Cancer Transcriptome Atlas (CTA) mRNA assay on 191 ROIs from a NSCLC tumor. [NSCLC_191_grid]
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary Dense spatial gene expression profiling of a NSCLC tumor. This study was part of Danaher & Kim et al., "Advances in mixed cell deconvolution enable quantification of cell types in spatially resolved gene expression data"
 
Overall design One NSCLC tumor was profiled with the GeoMx Cancer Transcriptome Altas RNA assay. 191 ROIs were chosen, and tumor (PanCK+) and microenvironment (PanCK-) AOIs were collected from each ROI.
 
Contributor(s) Danaher P, Kim Y, Nelson B, Maddy G, Yang Z, Piazza E, Beechem JM
Citation(s) 35046414
Submission date May 20, 2021
Last update date Feb 08, 2022
Contact name Patrick Danaher
Organization name NanoString Technologies, Inc.
Street address 530 Fairview Ave N
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Platforms (1)
GPL21697 NextSeq 550 (Homo sapiens)
Samples (376)
GSM5325538 L11_ROI01_Tumor [ICP20th-L11-ICPKilo-ROI01-Tumor-A02]
GSM5325539 L11_ROI01_TME [ICP20th-L11-ICPKilo-ROI01-TME-A03]
GSM5325540 L11_ROI02_Tumor [ICP20th-L11-ICPKilo-ROI02-Tumor-A04]
This SubSeries is part of SuperSeries:
GSE175927 GeoMx Cancer Transcriptome Atlas (CTA) mRNA assay
Relations
BioProject PRJNA731460
SRA SRP320669

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE174749_191grid_ICP20th_NegNorm_TargetCountMatrix.txt.gz 4.9 Mb (ftp)(http) TXT
GSE174749_191grid_ICP20th_TargetCountMatrix.txt.gz 634.1 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record
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