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Series GSE17598 Query DataSets for GSE17598
Status Public on Aug 06, 2010
Title 5-aza-2-deoxycytidine treatment of Swarm rat chondrosarcoma cells
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary The puropose of this experiment was to identify gene expression changes that result from 5-aza-2-deoxycytidine induced DNA demethylation of Swarm rat chondrosarcoma cells. The gene expression profiles of untreated Swarm rat chondrosarcoma cells were compared to the gene expression profiles of Swarm rat chondrosarcoma cells that were treated for 5 passages with a low dose of 5-aza-2-deoxycytidine (0.1uM).
 
Overall design Five chip study. For these experiments, microarray was carried out on untreated (control) Swarm rat chondrosarcoma cells (3 biological replicates), and microarray was also carried out on Swarm rat chondrosarcoma cells treated with 5-aza-2-deoxycytidine (2 biological replicates).
 
Contributor(s) Hamm CA
Citation(s) 20019818
Submission date Aug 11, 2009
Last update date Mar 21, 2012
Contact name Christopher A Hamm
Organization name Children’s Memorial Research Center
Department Cancer Biology and Epigenomics
Lab Soares
Street address 2430 N. Halsted Street
City Chicago
State/province IL
ZIP/Postal code 60614
Country USA
 
Platforms (1)
GPL8990 NimbleGen_Rat_385K_Array
Samples (5)
GSM438365 SRC-5AZA-1
GSM438366 SRC-5AZA-2
GSM438367 SCR-No-Treat-1
Relations
BioProject PRJNA118509

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17598_RAW.tar 54.2 Mb (http)(custom) TAR (of PAIR)
Processed data included within Sample table

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