|
| Status |
Public on Jun 09, 2023 |
| Title |
H3K79me3 and H3K79me2 in mESCs and preimplantation embryos |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
RNA-seq and ChIP-seq for H3K79me3 and H3K79me2 in mESCs and preimplantation embryos
|
| |
|
| Overall design |
H3K79me3 and H3K79me2 in mESCs and preimplantation embryos
|
| |
|
| Contributor(s) |
Lesch BJ, Malla AB, Yu H, Smith Z |
| Citation(s) |
37317657 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 HD098128 |
Germline Utx mutation as a model for transgenerational epigenetic inheritance |
YALE UNIVERSITY |
Bluma J Lesch |
|
| |
| Submission date |
Aug 25, 2021 |
| Last update date |
Jun 21, 2023 |
| Contact name |
Bluma J Lesch |
| Organization name |
Yale University
|
| Department |
Genetics
|
| Street address |
333 Cedar Street
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06525 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (25)
|
|
| Relations |
| BioProject |
PRJNA757691 |
| SRA |
SRP334061 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE182744_210820_Dot1LKO_mESCs_RNA_counts_summary.txt.gz |
982.1 Kb |
(ftp)(http) |
TXT |
| GSE182744_210820_Dot1Li_embryo_RNA_counts_summary.txt.gz |
191.3 Kb |
(ftp)(http) |
TXT |
| GSE182744_KO1_K79me2_peaks.bed.gz |
561 b |
(ftp)(http) |
BED |
| GSE182744_KO1_K79me3_peaks.bed.gz |
4.8 Kb |
(ftp)(http) |
BED |
| GSE182744_KO2_K79me2_peaks.bed.gz |
444 b |
(ftp)(http) |
BED |
| GSE182744_KO2_K79me3_peaks.bed.gz |
8.1 Kb |
(ftp)(http) |
BED |
| GSE182744_WT1_K79me2_peaks.bed.gz |
1.2 Mb |
(ftp)(http) |
BED |
| GSE182744_WT1_K79me3_peaks.bed.gz |
374.2 Kb |
(ftp)(http) |
BED |
| GSE182744_WT2_K79me2_peaks.bed.gz |
1.1 Mb |
(ftp)(http) |
BED |
| GSE182744_WT2_K79me3_peaks.bed.gz |
142.7 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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