NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE186485 Query DataSets for GSE186485
Status Public on Oct 24, 2024
Title 18S rRNA N6-methyladenosine (m6A) modification promotes tumorigenesis and chemoresistance via gain-of-function mutant p53 in nasopharyngeal carcinoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Other
Summary Mis-regulated mRNA translation and hyperactivation of ribosome biogenesis are the two main hallmarks of cancer cells, whereas their intrinsic links and molecular mechanisms remain poorly understood. Our current study revealed that METTL5 and its mediated 18S rRNA N6-methyladenosine modification at 1832 position (m6A1832) are elevated in nasopharyngeal carcinoma (NPC) and correlated with disease progression. Gain-of-function and loss-of-function assays showed that METTL5 mediated 18S rRNA m6A1832 modification promotes NPC cells proliferation and metastasis in vitro and in vivo. Mechanistically, loss of 18S rRNA m6A1832 modification impairs the assembly of 80S ribosome and therefore affecting global mRNA translation. Furthermore, polyribosome-bound mRNA sequencing (Polyribosome-RNA-seq), ribosome profiling sequencing (Ribo-seq) and whole exome sequencing (WES) data identified a METTL5/HSF4b/HSP90B1/mutant p53 (mutp53) axis which contributed to NPC tumorigenesis and chemoresistance. Our findings uncovered a novel mechanism underlying rRNA epigenetic modification in regulating mRNA translation and mutp53 pathway in cancer.
 
Overall design Polyribosome-bound-RNA-seq and Ribo-seq were used to study the differential translated genes in the METTL5 knockout and control cells.
 
Contributor(s) Chen B, Peng H
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 24, 2021
Last update date Oct 24, 2024
Contact name Hao Peng
E-mail(s) [email protected]
Phone +8618202049756
Organization name Guangdong General Hospital
Department Department of Breast Cancer
Street address Zhongshan 2nd Road, Guangzhou, 510080, China
City Guangzhou
State/province Guangdong
ZIP/Postal code 510080
Country China
 
Platforms (2)
GPL20795 HiSeq X Ten (Homo sapiens)
GPL23227 BGISEQ-500 (Homo sapiens)
Samples (16)
GSM5653159 Vector_Input_rep1
GSM5653160 Vector_Input_rep2
GSM5653161 Vector_Input_rep3
Relations
BioProject PRJNA774057
SRA SRP342986

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE186485_Polyribosome_mRNA_expression.txt.gz 82.4 Mb (ftp)(http) TXT
GSE186485_RiboSeq_reads.txt.gz 4.1 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap