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Series GSE189425 Query DataSets for GSE189425
Status Public on Aug 12, 2022
Title Stem cell-derived mouse embryos develop within an extra-embryonic yolk sac to form anterior brain regions and a beating heart
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We report the analysis by inDrop single cell sequencing of mouse embryos at embryonic day E6.5, E7.5 and E8.5 as well as the analysis of stem cell derived synthetic embryos generated with the previously reported protocol (Amadei et al., 2021) and cultured to day 5, day 6 and day 8 of development. We find that all the cell types present in the natural embryos examined at these timepoints were also present in their synthetic counterparts. Furthermore, in these synthetic structures we observed formation of neuroectoderm and surface ectoderm, a beating heart, gut and primordial germ cells and development occurred inside extraembryonic membranes (yolk sac and amnion) similarly to what occurs in natural development. We conclude that these synthetic embryos are a unique tool to recapitulate mouse post-implantation development.
 
Overall design Analysis of similarities and differences in the transcriptomes among mouse embryos and stem cell derived synthetic embryos, generated with the recently reported protocol (Amadei et al., 2021) and the new protocol established in this study
 
Contributor(s) Amadei G, Handford C, De Jonghe J, Hollfelder F
Citation(s) 36007540
Submission date Nov 23, 2021
Last update date Oct 07, 2022
Contact name Florian Hollfelder
E-mail(s) [email protected]
Organization name University of Cambridge
Lab Hollfelder group
Street address 80 Tennis court road
City Cambridge
ZIP/Postal code CB2 1AG
Country United Kingdom
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (28)
GSM5701522 ETiX day 5 fraction 1
GSM5701523 ETiX day 5 fraction 2
GSM5701524 ETiX day 5 fraction 3
Relations
BioProject PRJNA782985

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE189425_RAW.tar 218.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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