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GEO accession:
Series GSE192390
Query DataSets for GSE192390
Status
Public on Dec 22, 2021
Title
Batf-mediated Epigenetic Control of Effector CD8+ T Cell Differentiation
Organism
Mus musculus
Experiment type
Expression profiling by high throughput sequencing
Other
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
35179948
Submission date
Dec 21, 2021
Last update date
Mar 23, 2022
Contact name
Jim Kaminski
E-mail(s)
[email protected]
Organization name
Boston Children's Hospital
Street address
1 Blackfan Circle
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platforms (1)
GPL21626
NextSeq 550 (Mus musculus)
Samples (245)
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More...
GSM5746006
ATAC-Seq WT_day6_rest_3
GSM5746007
ATAC-Seq WT_day6_rest_2
GSM5746008
ATAC-Seq WT_day6_rest_1
GSM5746009
ATAC-Seq WT_day6_act_3
GSM5746010
ATAC-Seq WT_day6_act_2
GSM5746011
ATAC-Seq WT_day6_act_1
GSM5746012
ATAC-Seq BatfKO_day6_rest_3
GSM5746013
ATAC-Seq BatfKO_day6_rest_2
GSM5746014
ATAC-Seq BatfKO_day6_rest_1
GSM5746015
ATAC-Seq BatfKO_day6_act_3
GSM5746016
ATAC-Seq BatfKO_day6_act_2
GSM5746017
ATAC-Seq BatfKO_day6_act_1
GSM5746018
ATAC-Seq NoDox_Tbet_Rep1
GSM5746019
ATAC-Seq NoDox_Tbet_Rep2
GSM5746020
ATAC-Seq NoDox_Runx3_Tbet_Rep1
GSM5746021
ATAC-Seq NoDox_Runx3_Tbet_Rep2
GSM5746022
ATAC-Seq NoDox_Runx3_Rep1
GSM5746023
ATAC-Seq NoDox_Runx3_Rep2
GSM5746024
ATAC-Seq NoDox_IRF4_Tbet_Rep1
GSM5746025
ATAC-Seq NoDox_IRF4_Tbet_Rep2
GSM5746026
ATAC-Seq NoDox_IRF4_Runx3_Tbet_Rep1
GSM5746027
ATAC-Seq NoDox_IRF4_Runx3_Tbet_Rep2
GSM5746028
ATAC-Seq NoDox_IRF4_Runx3_Rep1
GSM5746029
ATAC-Seq NoDox_IRF4_Runx3_Rep2
GSM5746030
ATAC-Seq NoDox_IRF4_Rep1
GSM5746031
ATAC-Seq NoDox_IRF4_Rep2
GSM5746032
ATAC-Seq NoDox_BATF_Tbet_Rep1
GSM5746033
ATAC-Seq NoDox_BATF_Tbet_Rep2
GSM5746034
ATAC-Seq NoDox_BATF_Runx3_Tbet_Rep1
GSM5746035
ATAC-Seq NoDox_BATF_Runx3_Tbet_Rep2
GSM5746036
ATAC-Seq NoDox_BATF_Runx3_Rep1
GSM5746037
ATAC-Seq NoDox_BATF_Runx3_Rep2
GSM5746038
ATAC-Seq NoDox_BATF_IRF4_Tbet_Rep1
GSM5746039
ATAC-Seq NoDox_BATF_IRF4_Tbet_Rep2
GSM5746040
ATAC-Seq NoDox_BATF_IRF4_Runx3_Tbet_1
GSM5746041
ATAC-Seq NoDox_BATF_IRF4_Runx3_Tbet_2
GSM5746042
ATAC-Seq NoDox_BATF_IRF4_Runx3_1
GSM5746043
ATAC-Seq NoDox_BATF_IRF4_Runx3_2
GSM5746044
ATAC-Seq NoDox_BATF_IRF4_Rep1
GSM5746045
ATAC-Seq NoDox_BATF_IRF4_Rep2
GSM5746046
ATAC-Seq NoDox_BATF_Rep1
GSM5746047
ATAC-Seq NoDox_BATF_Rep2
GSM5746048
ATAC-Seq NoDox_3T3_p23_1
GSM5746049
ATAC-Seq NoDox_3T3_p23_2
GSM5746050
ATAC-Seq Dox72h_Tbet_Rep1
GSM5746051
ATAC-Seq Dox72h_Tbet_Rep2
GSM5746052
ATAC-Seq Dox72h_Runx3_Tbet_Rep1
GSM5746053
ATAC-Seq Dox72h_Runx3_Tbet_Rep2
GSM5746054
ATAC-Seq Dox72h_Runx3_Rep1
GSM5746055
ATAC-Seq Dox72h_Runx3_Rep2
GSM5746056
ATAC-Seq Dox72h_NoTFs_Rep1
GSM5746057
ATAC-Seq Dox72h_NoTFs_Rep2
GSM5746058
ATAC-Seq Dox72h_IRF4_Tbet_Rep1
GSM5746059
ATAC-Seq Dox72h_IRF4_Tbet_Rep2
GSM5746060
ATAC-Seq Dox72h_IRF4_Runx3_Tbet_Rep1
GSM5746061
ATAC-Seq Dox72h_IRF4_Runx3_Tbet_Rep2
GSM5746062
ATAC-Seq Dox72h_IRF4_Runx3_Rep1
GSM5746063
ATAC-Seq Dox72h_IRF4_Runx3_Rep2
GSM5746064
ATAC-Seq Dox72h_IRF4_Rep1
GSM5746065
ATAC-Seq Dox72h_IRF4_Rep2
GSM5746066
ATAC-Seq Dox72h_BATF_Tbet_Rep1
GSM5746067
ATAC-Seq Dox72h_BATF_Tbet_Rep2
GSM5746068
ATAC-Seq Dox72h_BATF_Runx3_Tbet_Rep1
GSM5746069
ATAC-Seq Dox72h_BATF_Runx3_Tbet_Rep2
GSM5746070
ATAC-Seq Dox72h_BATF_Runx3_Rep1
GSM5746071
ATAC-Seq Dox72h_BATF_Runx3_Rep2
GSM5746072
ATAC-Seq Dox72h_BATF_IRF4_Tbet_Rep1
GSM5746073
ATAC-Seq Dox72h_BATF_IRF4_Tbet_Rep2
GSM5746074
ATAC-Seq Dox72h_BATF_IRF4_Runx3_Tbet_1
GSM5746075
ATAC-Seq Dox72h_BATF_IRF4_Runx3_Tbet_2
GSM5746076
ATAC-Seq Dox72h_BATF_IRF4_Runx3_1
GSM5746077
ATAC-Seq Dox72h_BATF_IRF4_Runx3_2
GSM5746078
ATAC-Seq Dox72h_BATF_IRF4_Rep1
GSM5746079
ATAC-Seq Dox72h_BATF_IRF4_Rep2
GSM5746080
ATAC-Seq Dox72h_BATF_Rep1
GSM5746081
ATAC-Seq Dox72h_BATF_Rep2
GSM5746082
ATAC-Seq E1_WT_iCre_P14
GSM5746083
ATAC-Seq E2_WT_iCre_P14
GSM5746084
ATAC-Seq F1_WT_P14
GSM5746085
ATAC-Seq F2_WT_P14
GSM5746086
ATAC-Seq N1_Naive_WT_P14
GSM5746087
ATAC-Seq N2_Naive_WT_P14
GSM5746088
ATAC-Seq C1_WT_Irf4-floxed_Cre_P14
GSM5746089
ATAC-Seq C2_WT_Irf4-floxed_Cre_P14
GSM5746090
ATAC-Seq D1_Irf4_cKO_P14
GSM5746091
ATAC-Seq D2_Irf4_cKO_P14
GSM5746092
ATAC-Seq B1_WT_Batf-floxed_Cre_P14
GSM5746093
ATAC-Seq B2_WT_Batf-floxed_Cre_P14
GSM5746094
ATAC-Seq A1_Batf_cKO_P14
GSM5746095
ATAC-Seq A2_Batf_cKO_P14
GSM5746096
ChIP-Seq WT_Day6_BATF_5ug
GSM5746097
ChIP-Seq WT_Day6_BATF_10ug
GSM5746098
ChIP-Seq WT_Eomes_2ug_s8
GSM5746099
ChIP-Seq WT_Eomes_5ug_s8
GSM5746100
ChIP-Seq WT_Ets1_10ug_Day6_Set2
GSM5746101
ChIP-Seq WT_Ets1_5ug_Day6_Set2
GSM5746102
ChIP-Seq WT_Day6_Fosl2_5ug
GSM5746103
ChIP-Seq WT_Day6_Fosl2_10ug
GSM5746104
ChIP-Seq WT_Day6_IRF4_5ug
GSM5746105
ChIP-Seq WT_Day6_IRF4_10ug
GSM5746106
ChIP-Seq WT_Day6_Jund_10ug
GSM5746107
ChIP-Seq WT_Day6_Jund_05ug
GSM5746108
ChIP-Seq WT_Runx3_2ul_s8
GSM5746109
ChIP-Seq WT_Day6_Stat3_5ug
GSM5746110
ChIP-Seq WT_Day6_Stat3_10ug
GSM5746111
ChIP-Seq WT_Stat5_2ug
GSM5746112
ChIP-Seq WT_Stat5_10ug
GSM5746113
ChIP-Seq WT_Tbet_10ug_s8
GSM5746114
ChIP-Seq WT_Tbet_5ug_s8
GSM5746115
ChIP-Seq WT_Input_s8
GSM5746116
ChIP-Seq WT_InputForEts1_Day6_Set2
GSM5746117
ChIP-Seq WT_input_S15
GSM5746118
ChIP-Seq April2017_Day6WT_Input
GSM5746119
ChIP-Seq WT_Input_June2017
GSM5746120
ChIP-Seq BATFKO_Eomes_2ug_Day6
GSM5746121
ChIP-Seq BATFKO_Eomes_5ug_Day6
GSM5746122
ChIP-Seq BATFKO_Ets1_10ug_Day6
GSM5746123
ChIP-Seq BATFKO_Ets1_5ug_Day6
GSM5746124
ChIP-Seq BATFKO_Day6_Fosl2_5ug
GSM5746125
ChIP-Seq BATFKO_Day6_Fosl2_10ug
GSM5746126
ChIP-Seq BATFKO_Day6_IRF4_5ug
GSM5746127
ChIP-Seq BATFKO_Day6_IRF4_10ug
GSM5746128
ChIP-Seq BATFKO_Day6_Jund_10ug
GSM5746129
ChIP-Seq BATFKO_Day6_Jund_05ug
GSM5746130
ChIP-Seq BATFKO_Day6_Runx3_02ug
GSM5746131
ChIP-Seq BATFKO_Day6_Runx3_05ug
GSM5746132
ChIP-Seq BATFKO_Day6_Stat3_5ug
GSM5746133
ChIP-Seq BATFKO_Day6_Stat3_10ug
GSM5746134
ChIP-Seq BatfKO_Stat5_2ug_S16
GSM5746135
ChIP-Seq BatfKO_Stat5_10ug_S17
GSM5746136
ChIP-Seq BATFKO_Tbet_10ug_Day6
GSM5746137
ChIP-Seq BATFKO_Tbet_5ug_Day6
GSM5746138
ChIP-Seq BATFKO_Input_Day6
GSM5746139
ChIP-Seq BATFKO_InputForEts1_Day6
GSM5746140
ChIP-Seq BatfKO_input_S18
GSM5746141
ChIP-Seq April2017_Day6BATFKO_Input
GSM5746142
ChIP-Seq BATFKO_Input_June2017
GSM5746143
HiChIP_TCell_Batf
GSM5746144
HiChIP_TCell_Ctcf
GSM5746145
HiChIP_3T3_Batf
GSM5746146
HiChIP_3T3_Batf_Irf4
GSM5746147
HiChIP_3T3_Batf_Irf4_Runx3_Tbet
GSM5746148
HiChIP_3T3_CTCF
GSM5746157
RNA-Seq Dox72h_3T3_1_S3
GSM5746158
RNA-Seq Dox72h_3T3_2_S4
GSM5746159
RNA-Seq Dox72h_Batf_1_S7
GSM5746160
RNA-Seq Dox72h_Batf_2_S8
GSM5746161
RNA-Seq Dox72h_Batf_Irf4_1_S15
GSM5746162
RNA-Seq Dox72h_Batf_Irf4_2_S23
GSM5746163
RNA-Seq Dox72h_Batf_Irf4_Runx3_Tbet_1_S23
GSM5746164
RNA-Seq Dox72h_Batf_Irf4_Runx3_Tbet_2_S24
GSM5746165
RNA-Seq Dox72h_Batf_Irf4_Tbet_1_S19
GSM5746166
RNA-Seq Dox72h_Batf_Irf4_Tbet_2_S20
GSM5746167
RNA-Seq Dox72h_Irf4_1_S11
GSM5746168
RNA-Seq Dox72h_Irf4_2_S12
GSM5746169
RNA-Seq NoDox_3T3_1_S1
GSM5746170
RNA-Seq NoDox_3T3_2_S2
GSM5746171
RNA-Seq NoDox_Batf_1_S5
GSM5746172
RNA-Seq NoDox_Batf_2_S6
GSM5746173
RNA-Seq NoDox_Batf_Irf4_1_S21
GSM5746174
RNA-Seq NoDox_Batf_Irf4_2_S22
GSM5746175
RNA-Seq NoDox_Batf_Irf4_Runx3_Tbet_1_S21
GSM5746176
RNA-Seq NoDox_Batf_Irf4_Runx3_Tbet_2_S22
GSM5746177
RNA-Seq NoDox_Batf_Irf4_Tbet_1_S17
GSM5746178
RNA-Seq NoDox_Batf_Irf4_Tbet_2_S24
GSM5746179
RNA-Seq NoDox_Irf4_1_S9
GSM5746180
RNA-Seq NoDox_Irf4_2_S10
GSM5746181
RNA-Seq Dox72h_Batf_Irf4_Runx3_rep1_S15
GSM5746182
RNA-Seq Dox72h_Batf_Irf4_Runx3_rep2_S16
GSM5746183
RNA-Seq Dox72h_Batf_Runx3_Tbet_rep1_S19
GSM5746184
RNA-Seq Dox72h_Batf_Runx3_Tbet_rep2_S20
GSM5746185
RNA-Seq Dox72h_Runx3_rep1_S3
GSM5746186
RNA-Seq Dox72h_Runx3_rep2_S4
GSM5746187
RNA-Seq Dox72h_Runx3_Tbet_rep1_S11
GSM5746188
RNA-Seq Dox72h_Runx3_Tbet_rep2_S12
GSM5746189
RNA-Seq Dox72h_Tbet_rep1_S7
GSM5746190
RNA-Seq Dox72h_Tbet_rep2_S8
GSM5746191
RNA-Seq NoDox_Batf_Irf4_Runx3_rep1_S13
GSM5746192
RNA-Seq NoDox_Batf_Irf4_Runx3_rep2_S14
GSM5746193
RNA-Seq NoDox_Batf_Runx3_Tbet_rep1_S17
GSM5746194
RNA-Seq NoDox_Batf_Runx3_Tbet_rep2_S18
GSM5746195
RNA-Seq NoDox_Runx3_rep1_S1
GSM5746196
RNA-Seq NoDox_Runx3_rep2_S2
GSM5746197
RNA-Seq NoDox_Runx3_Tbet_rep1_S9
GSM5746198
RNA-Seq NoDox_Runx3_Tbet_rep2_S10
GSM5746199
RNA-Seq NoDox_Tbet_rep1_S5
GSM5746200
RNA-Seq NoDox_Tbet_rep2_S6
GSM5746201
RNA-Seq Dox72h_Batf_Runx3_rep1_S7
GSM5746202
RNA-Seq Dox72h_Batf_Runx3_rep2_S8
GSM5746203
RNA-Seq Dox72h_Batf_Tbet_rep1_S3
GSM5746204
RNA-Seq Dox72h_Batf_Tbet_rep2_S4
GSM5746205
RNA-Seq Dox72h_Irf4_Runx3_rep1_S11
GSM5746206
RNA-Seq Dox72h_Irf4_Runx3_rep2_S12
GSM5746207
RNA-Seq Dox72h_Irf4_Runx3_Tbet_rep1_S19
GSM5746208
RNA-Seq Dox72h_Irf4_Runx3_Tbet_rep2_S20
GSM5746209
RNA-Seq Dox72h_Irf4_Tbet_rep1_S15
GSM5746210
RNA-Seq Dox72h_Irf4_Tbet_rep2_S16
GSM5746211
RNA-Seq NoDox_Batf_Runx3_rep1_S5
GSM5746212
RNA-Seq NoDox_Batf_Runx3_rep2_S6
GSM5746213
RNA-Seq NoDox_Batf_Tbet_rep1_S1
GSM5746214
RNA-Seq NoDox_Batf_Tbet_rep2_S2
GSM5746215
RNA-Seq NoDox_Irf4_Runx3_rep1_S9
GSM5746216
RNA-Seq NoDox_Irf4_Runx3_rep2_S10
GSM5746217
RNA-Seq NoDox_Irf4_Runx3_Tbet_rep1_S17
GSM5746218
RNA-Seq NoDox_Irf4_Runx3_Tbet_rep2_S18
GSM5746219
RNA-Seq NoDox_Irf4_Tbet_rep1_S13
GSM5746220
RNA-Seq NoDox_Irf4_Tbet_rep2_S14
GSM5746221
RNA-Seq Day0_1_S1
GSM5746222
RNA-Seq Day0_2_S2
GSM5746223
RNA-Seq Day0_3_S3
GSM5746224
RNA-Seq Day1_1_S4
GSM5746225
RNA-Seq Day1_2_S5
GSM5746226
RNA-Seq Day1_3_S6
GSM5746227
RNA-Seq Day2_1_S7
GSM5746228
RNA-Seq Day2_2_S8
GSM5746229
RNA-Seq Day2_3_S9
GSM5746230
RNA-Seq Day3_1_S10
GSM5746231
RNA-Seq Day3_2_S11
GSM5746232
RNA-Seq Day3_3_S12
GSM5746233
RNA-Seq Day4_1_S13
GSM5746234
RNA-Seq Day4_2_S14
GSM5746235
RNA-Seq Day4_3_S15
GSM5746236
RNA-Seq Day5_1_S16
GSM5746237
RNA-Seq Day5_2_S17
GSM5746238
RNA-Seq Day5_3_S18
GSM5746239
RNA-Seq Day6_1_S19
GSM5746240
RNA-Seq Day6_2_S20
GSM5746241
RNA-Seq Day6_3_S21
GSM5746242
RNA-Seq Day6_Act_1_S22
GSM5746243
RNA-Seq Day6_Act_2_S23
GSM5746244
RNA-Seq Day6_Act_3_S24
GSM5746245
RNA-Seq A1_Batf_cKO_P14_S1
GSM5746246
RNA-Seq A2_Batf_cKO_P14_S8
GSM5746247
RNA-Seq B1_WT_Batf_floxed_Cre_P14_S2
GSM5746248
RNA-Seq B2_WT_Batf_floxed_Cre_P14_S9
GSM5746249
RNA-Seq C1_WT_Irf4_floxed_Cre_P14_S3
GSM5746250
RNA-Seq C2_WT_Irf4_floxed_Cre_P14_S10
GSM5746251
RNA-Seq D1_Irf4_cKO_P14_S4
GSM5746252
RNA-Seq D2_Irf4_cKO_P14_S11
GSM5746253
RNA-Seq E1_WT_iCre_P14_S5
GSM5746254
RNA-Seq E2_WT_iCre_P14_S12
GSM5746255
RNA-Seq F1_WT_P14_S6
GSM5746256
RNA-Seq F2_WT_P14_S13
GSM5746257
RNA-Seq N1_Naive_WT_P14_S7
GSM5746258
RNA-Seq N2_Naive_WT_P14_S14
This SuperSeries is composed of the following SubSeries:
Less...
More...
GSE192385
Batf-mediated Epigenetic Control of Effector CD8+ T Cell Differentiation (ATAC-Seq)
GSE192386
Batf-mediated Epigenetic Control of Effector CD8+ T Cell Differentiation (ChIP-Seq)
GSE192387
Batf-mediated Epigenetic Control of Effector CD8+ T Cell Differentiation (HiChIP)
GSE192389
Batf-mediated Epigenetic Control of Effector CD8+ T Cell Differentiation (RNA-Seq)
Relations
BioProject
PRJNA791324
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE192390_RAW.tar
559.4 Mb
(http)
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TAR (of BED, TXT)
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