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Series GSE19950 Query DataSets for GSE19950
Status Public on Dec 31, 2010
Title Multinucleated Tartrate Resistant Acid Phosphatase Positive Cells with Macrophage and Osteoclast Phenotypes in Bone
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary Prothrombin (PT) and osteopontin (OPN) promotes adhesion of different TRAP-positive multinucleated cells isolated from rat long bone (Hu et al. Exp Cell Res. 2008; 314: 638-50). The PT-adhering cell could represent either an immature precursor to the OPN-adherent osteoclast or constitute a distinct multinucleated cell population with a unique role in bone. Herein, phenotypic differences between PT- and OPN- cells were investigated with microarray- expression analysis. Characteristic for PT-cells was expression of innate immune response genes and scavenger receptors whereas OPN-cells expressed typical osteoclast proteins such as collagenases implicated in bone degradation.
 
Overall design Bone cells were extracted from neonatal Sprague Dawley rat long bones. The extracted cells were attached to PT or OPN, and thereby two cell populations were isolated. mRNA was extracted from these cells and their expression was compared with the Affymetrix GeneChip Rat Gene 1.0 ST Array.
 
Contributor(s) Karlström E, Ek-Rylander B, Wendel M, Andersson G
Citation(s) 21195739
Submission date Jan 19, 2010
Last update date Nov 06, 2013
Contact name Erik Karlström
E-mail(s) [email protected]
Organization name Karolinska Institutet
Department Department of Laboratory Medicine
Street address Division of Pathology
City Stockholm
ZIP/Postal code SE-141 86
Country Sweden
 
Platforms (1)
GPL6247 [RaGene-1_0-st] Affymetrix Rat Gene 1.0 ST Array [transcript (gene) version]
Samples (6)
GSM498597 PT1
GSM498598 PT2
GSM498599 PT4
Relations
BioProject PRJNA120187

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19950_RAW.tar 26.3 Mb (http)(custom) TAR (of CEL, CHP)
Processed data included within Sample table
Processed data provided as supplementary file

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