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| Status |
Public on Dec 28, 2022 |
| Title |
Transcriptome analysis and 5‘-end mapping of total RNA from Rhodobacter sphaeroides wild type and RNase E (rne) mutant strain, grown under aerobic, microaerobic or phototrophic conditions |
| Organism |
Cereibacter sphaeroides |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The conserved endoribonuclease RNase E is essential in Rhodobacter sphaeroides and acts as global regulator of the transcriptome. By comparison of an RNase E mutant (showing reduced enzyme activity) with the Rhodobacter sphaeroides wild type, both grown under three different growth conditions, we analysed the impact of RNase E on the adaption of Rhodobacter sphaeroides to different growth conditions.
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| |
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| Overall design |
Comparative gene expression profiling analysis of RNAseq data of independent biological triplicates of Rhodobacter sphaeroides wild type and RNase E (rne) mutant strain under three different growth conditions (aerobic, microaerobic or phototrophic).
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| |
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| Contributor(s) |
Börner J, Friedrich T, Bartkuhn M, Klug G |
| Citation(s) |
36555125, 36988476, 39201809 |
| |
| Submission date |
Apr 18, 2022 |
| Last update date |
Sep 13, 2024 |
| Contact name |
Tobias Friedrich |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Pennsylvania
|
| Street address |
421 Curie Boulevard
|
| City |
Philadelphia |
| State/province |
Pennsylvania |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL32157 |
Illumina NextSeq 500 (Cereibacter sphaeroides) |
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| Samples (18)
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| Relations |
| BioProject |
PRJNA827819 |
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