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| Status |
Public on Mar 27, 2024 |
| Title |
Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
This SuperSeries is composed of the SubSeries listed below.
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| Overall design |
Refer to individual Series
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| Citation(s) |
37565540 |
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| Submission date |
Jun 13, 2022 |
| Last update date |
Mar 28, 2024 |
| Contact name |
Pawel Herzyk |
| E-mail(s) |
[email protected]
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| Phone |
00441413303180
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| Organization name |
University of Glasgow
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| Department |
College of Medical, Veterinary and Life Sciences
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| Lab |
Glasgow Polyomics
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| Street address |
Wolfson Wohl Cancer Research Centre, Garscube Estate
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| City |
Bearsden |
| ZIP/Postal code |
G61 1QH |
| Country |
United Kingdom |
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| Platforms (1) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
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| Samples (22)
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| GSM6235018 |
HDC1 KO mutant, control media, replicate 1 |
| GSM6235019 |
HDC1 KO mutant, control media, replicate 2 |
| GSM6235020 |
HDC1 KO mutant, control media, replicate 3 |
| GSM6235021 |
HDC1 KO mutant, 100 mM NaCl, replicate 1 |
| GSM6235022 |
HDC1 KO mutant, 100 mM NaCl, replicate 2 |
| GSM6235023 |
HDC1 KO mutant, 100 mM NaCl, replicate 3 |
| GSM6235024 |
HDC1 KO mutant complemented with full length HDC1 gene sequence, control media, replicate 1 |
| GSM6235025 |
HDC1 KO mutant complemented with full length HDC1 gene sequence, control media, replicate 2 |
| GSM6235026 |
HDC1 KO mutant complemented with full length HDC1 gene sequence, control media, replicate 3 |
| GSM6235027 |
HDC1 KO mutant complemented with full length HDC1 gene sequence, 100 mM NaCl, replicate 1 |
| GSM6235028 |
HDC1 KO mutant complemented with full length HDC1 gene sequence, 100 mM NaCl, replicate 2 |
| GSM6235029 |
HDC1 KO mutant complemented with full length HDC1 gene sequence, 100 mM NaCl, replicate 3 |
| GSM6235030 |
HDC1 KO mutant expressing RXT3 sequence of HDC1, control media, replicate 1 |
| GSM6235031 |
HDC1 KO mutant expressing RXT3 sequence of HDC1, control media, replicate 2 |
| GSM6235032 |
HDC1 KO mutant expressing RXT3 sequence of HDC1, control media, replicate 3 |
| GSM6235033 |
HDC1 KO mutant expressing RXT3 sequence of HDC1, 100mM NaCl, replicate 1 |
| GSM6235034 |
HDC1 KO mutant expressing RXT3 sequence of HDC1, 100mM NaCl, replicate 2 |
| GSM6235035 |
HDC1 KO mutant expressing RXT3 sequence of HDC1, 100mM NaCl, replicate 3 |
| GSM6241061 |
H3K9K14Ac, HDC1 KO mutant, control medium |
| GSM6241062 |
H3K9K14Ac, HDC1 KO mutant, 100 mM NaCl |
| GSM6241063 |
H3K9K14Ac, HDC1 KO mutant complemented with full length HDC1 gene sequence, control media |
| GSM6241064 |
H3K9K14Ac, HDC1 KO mutant complemented with full length HDC1 gene sequence, 100 mM NaCl |
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| This SuperSeries is composed of the following SubSeries: |
| GSE205893 |
Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process [RNA-Seq] |
| GSE206054 |
Histone Deacetylase Complex 1 moderates stress responsiveness of germinating seeds via a histone-1-dependent process [ChIP-Seq] |
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| Relations |
| BioProject |
PRJNA848863 |
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