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Series GSE210748 Query DataSets for GSE210748
Status Public on Jan 03, 2023
Title Spatial compartmentalization of signalling imparts source-specific functions on secreted factors.
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Efficient regeneration requires multiple cell types acting in a coordination. To better understand the intercellular networks involved and how they change when regeneration fails, we profiled the transcriptome of hematopoietic, stromal, myogenic, and endothelial cells over 14 days following acute muscle damage.
 
Overall design Hematopoietic, stromal, myogenic, and endothelial cells were collected over 14 days following acute muscle damage and subjected to RNAseq. We used a novel bioinformatics pipeline to generate a time-resolved computational model of interactions.
 
Contributor(s) Groppa E, Yi L, Stach T, Tung LW
Citation(s) 36729831, 37831606
Submission date Aug 08, 2022
Last update date Oct 26, 2023
Contact name Fabio Rossi
E-mail(s) [email protected]
Organization name University of British Columbia
Department School of Biomedical Engineering
Lab Rossi
Street address 2222 Health Sciences Mall
City Vancouver
State/province BC
ZIP/Postal code V6T1Z3
Country Canada
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (178)
GSM6436480 Muscle undamaged [Inflammatory_WT: 0d-1]
GSM6436481 Muscle undamaged [Inflammatory_WT: 0d-2]
GSM6436482 Muscle 1 day post NTX [Inflammatory_WT: 1d-1]
Relations
BioProject PRJNA867361

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE210748_Raw_counts_EC_CCR2KO.xlsx 2.0 Mb (ftp)(http) XLSX
GSE210748_Raw_counts_EC_WT.xlsx 3.9 Mb (ftp)(http) XLSX
GSE210748_Raw_counts_FAP_CCR2KO.xlsx 2.4 Mb (ftp)(http) XLSX
GSE210748_Raw_counts_FAP_WT.xlsx 4.1 Mb (ftp)(http) XLSX
GSE210748_Raw_counts_Inflammatory_WT.xlsx 3.5 Mb (ftp)(http) XLSX
GSE210748_Raw_counts_MP_CCR2KO.xlsx 1.4 Mb (ftp)(http) XLSX
GSE210748_Raw_counts_MP_WT.xlsx 2.4 Mb (ftp)(http) XLSX
GSE210748_Raw_counts_Pericyte_WT.xlsx 1.5 Mb (ftp)(http) XLSX
GSE210748_Raw_counts_total_tissue_WT.xlsx 2.7 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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