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Series GSE212402 Query DataSets for GSE212402
Status Public on Sep 03, 2022
Title Gene expression profile at single cell level of Bronchoalveolar Lavage fluid (BALF) cells from mice
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Bronchoalveolar Lavage cells include resident and infiltrating immune cells in repsone to infections. We used single cell RNA sequencing (scRNA-seq) to analyze the diversity of BALF cells.
 
Overall design BALF cells in mice were isolated and analyzed using scRNAseq.
 
Contributor(s) Sun K, Niu M
Citation(s) 36203588
Submission date Aug 31, 2022
Last update date Oct 27, 2022
Contact name Meng Niu
E-mail(s) [email protected]
Phone 7044517764
Organization name University of Nebraska Medical Center
Department Department of Neurological sciences
Street address 42nd and Emile
City OMAHA
State/province NE
ZIP/Postal code 68198
Country USA
 
Platforms (2)
GPL19057 Illumina NextSeq 500 (Mus musculus)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (6)
GSM6529481 PR8/MRSA_WT, replicate 1, scRNAseq
GSM6529482 PR8/MRSA_IFNgRKO, scRNAseq
GSM6529483 PR8/MRSA_WT, replicate 2, scRNAseq
Relations
BioProject PRJNA875385

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE212402_RAW.tar 103.8 Mb (http)(custom) TAR (of H5)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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