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Series GSE216375 Query DataSets for GSE216375
Status Public on Feb 22, 2023
Title The essential roles of FXR in diet and aging affected metabolic changes and liver disease development: a multi-omics study
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Aging and unhealthy diets are risks for metabolic diseases including liver cancer. Bile acid receptor farnesoid X receptor (FXR) knockout (KO) mice develop metabolic liver diseases and progress into liver cancer as they age, and Western diet (WD) intake facilitates liver carcinogenesis in those mice. This study aimed to uncover molecular signatures within the gut-liver axis for diet and age-linked liver diseases in FXR-dependent or independent manners.
Many more transcripts were changed due to WD intake and aging in WT mice than those in FXR KO mice. In other words, WD intake and aging impact the hepatic transcriptomes and metabolomes in an FXR-dependent manner. In WT mice, WD/aging upregulated inflammation-related genes and downregulated genes involved in oxidative phosphorylation (OXPHOS). Urine metabolomes provided clear distinguishing for differential dietary intake. By contrast, the metabolomes of the liver, serum, or urine could reflect age differences. Further, irrespective of differential diets intake or ages, transcriptomes, metabolomes, and cecal microbiota distinguished WT and FXR KO. Western dietary patterns and aging share molecular commonality with FXR deactivation. Notably, WD, aging, and FXR deactivation commonly altered hepatic cell division-related transcripts (Cenpe, Ect2, Top2a, Kif20a, Tpx2, Nuf2, Kif18b, Aspm, E2f8, and Hmmr), which are associated with overall survival rate in HCC patients. In conclusion, FXR is essential for maintaining metabolic homeostasis in response to WD intake and aging. FXR activation helps to alleviate diet and/or aging-induced metabolic health issues.
 
Overall design Wild-type and Farnesoid X receptor (FXR) KO mice were fed a control diet (CD) or Western diet (WD) since weaning. Transcriptome profile of livers from these mice at the age of 5, 10, and 15 months (4 mice per group).
 
Contributor(s) Yang G, Wan YY
Citation(s) 36803569
https://doi.org/10.1101/2023.03.11.532149
Submission date Oct 23, 2022
Last update date Mar 16, 2023
Contact name Guiyan Yang
E-mail(s) [email protected]
Organization name University of California at Davis
Department Department of Medical Pathology and Laboratory Medicine
Lab Wan Lab
Street address 4645 2nd Ave
City Sacramento
State/province CA
ZIP/Postal code 95817
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (48)
GSM6671182 A_5_1
GSM6671183 A_5_2
GSM6671184 A_5_3
Relations
BioProject PRJNA893365

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE216375_Liver_RNA_seq_Normalized_read_count.txt.gz 8.3 Mb (ftp)(http) TXT
GSE216375_Liver_RNA_seq_raw_count.txt.gz 1.9 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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