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GEO accession:
Series GSE216989
Query DataSets for GSE216989
Status
Public on Aug 07, 2023
Title
Decitabine treatment reveals a functional role of DNA hypomethylation in organising enhancer-promoter interactions
Organism
Homo sapiens
Experiment type
Methylation profiling by genome tiling array
Other
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
38448820
Submission date
Nov 01, 2022
Last update date
Mar 13, 2024
Contact name
Joanna Achinger-Kawecka
E-mail(s)
[email protected]
Organization name
South Australian Immunogenomics Cancer Institute
Street address
AHMS Building, North Terrace
City
Adelaide
State/province
SA
ZIP/Postal code
5005
Country
Australia
Platforms (2)
GPL21145
Infinium MethylationEPIC
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
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GSM6701736
TAMR Control Early 1 [EPIC]
GSM6701737
TAMR Control Early 2 [EPIC]
GSM6701738
TAMR Decitabine Day 7 1 [EPIC]
GSM6701739
TAMR Decitabine Day 7 2 [EPIC]
GSM6701740
TAMR Decitabine Recovery 1 [EPIC]
GSM6701741
TAMR Decitabine Recovery 2 [EPIC]
GSM6701742
TAMR Control Late 1 [EPIC]
GSM6701743
TAMR Control Late 2 [EPIC]
GSM6701744
TAMR Control Early 1 [PCHi-C]
GSM6701745
TAMR Control Early 2 [PCHi-C]
GSM6701746
TAMR Decitabine Day 7 1 [PCHi-C]
GSM6701747
TAMR Decitabine Day 7 2 [PCHi-C]
GSM6701748
TAMR Decitabine Recovery 1 [PCHi-C]
GSM6701749
TAMR Decitabine Recovery 2 [PCHi-C]
GSM6701750
TAMR Control Late 1 [PCHi-C]
GSM6701751
TAMR Control Late 2 [PCHi-C]
GSM6701752
TAMR Control Early 1 [RNA-seq]
GSM6701753
TAMR Control Early 2 [RNA-seq]
GSM6701754
TAMR Decitabine Day 7 1 [RNA-seq]
GSM6701755
TAMR Decitabine Day 7 2 [RNA-seq]
GSM6701756
TAMR Decitabine Recovery 1 [RNA-seq]
GSM6701757
TAMR Decitabine Recovery 2 [RNA-seq]
GSM6701758
TAMR Control Late 1 [RNA-seq]
GSM6701759
TAMR Control Late 2 [RNA-seq]
This SuperSeries is composed of the following SubSeries:
GSE216986
Decitabine treatment reveals a functional role of DNA hypomethylation in organising enhancer-promoter interactions [EPIC]
GSE216987
Decitabine treatment reveals a functional role of DNA hypomethylation in organising enhancer-promoter interactions [Promoter Capture Hi-C]
GSE216988
Decitabine treatment reveals a functional role of DNA hypomethylation in organising enhancer-promoter interactions [RNA-seq]
Relations
BioProject
PRJNA896526
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE216989_RAW.tar
1.3 Gb
(http)
(custom)
TAR (of IDAT, TXT)
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