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Series GSE218583 Query DataSets for GSE218583
Status Public on Jul 18, 2023
Title Genome-wide analysis of transcriptome and histone modifications in Brassica napus hybrids [ChIP-seq]
Organism Brassica napus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We integrated data of transcriptome and histone modifications (H3K4me3 and H3K27me3) for HZ62 in three tissue types (seedling, flower bud and silique).Histone modifications analysis suggested there was histone modifications reprogramming in the B. napus hybrids compeared with parents.
 
Overall design Comparative histone modifications (H3K4me3 and H3K27me3) analysis for HZ62 (seedling, flower bud and silique) and its parents.
 
Contributor(s) Ma M, Zhong W, Zhang Q, Shen J
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Submission date Nov 22, 2022
Last update date Jul 19, 2023
Contact name Wenying Zhong
E-mail(s) [email protected]
Organization name Huazhong Agricultural University
Street address Lion Rock Street
City Wuhan
ZIP/Postal code 430072
Country China
 
Platforms (1)
GPL26378 HiSeq X Ten (Brassica napus)
Samples (12)
GSM6752839 HZ62_flower_H3K27me3_BHCS-175
GSM6752840 HZ62_flower_H3K27me3_BHCS-187
GSM6752841 HZ62_flower_H3K4me3_BHCS-174
This SubSeries is part of SuperSeries:
GSE218592 Genome-wide analysis of transcriptome and histone modifications in Brassica napus hybrids
Relations
BioProject PRJNA904357

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE218583_RAW.tar 11.9 Mb (http)(custom) TAR (of XLS)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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