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| Status |
Public on Mar 06, 2024 |
| Title |
Chromosome conformation capture (Hi-C) of the turquoise killifish |
| Organism |
Nothobranchius furzeri |
| Experiment type |
Other
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| Summary |
This approach was used to increase the continuity of the killifish genome, and assess the relative distance of specific genes from the sex locus.
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| Overall design |
Hi-C procedure was used to map 3D genomic interactions in killifish
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| Contributor(s) |
Moses E, Atlan T, Franek R, Siddiqui A, Marinov GK, Shifman S, Zucker DM, Oron-Gottesman A, Greenleaf WJ, Cohen E, Ram O, Harel I |
| Citation(s) |
38750187 |
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| Submission date |
Nov 29, 2022 |
| Last update date |
Jun 05, 2024 |
| Contact name |
Itamar Harel |
| E-mail(s) |
[email protected]
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| Organization name |
The Hebrew University of Jerusalem
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| Department |
Genetics
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| Lab |
Harel
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| Street address |
Givat Ram
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| City |
Jerusalem |
| ZIP/Postal code |
9190401 |
| Country |
Israel |
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| Platforms (1) |
| GPL30852 |
NextSeq 550 (Nothobranchius furzeri) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA906485 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE218971_GCA_001465895.2_Nfu_20140520_genomic.FINAL.FINAL.fasta.gz |
275.8 Mb |
(ftp)(http) |
FASTA |
| GSE218971_inter.hic |
637.7 Mb |
(ftp)(http) |
HIC |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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